User: amitunited0532

Reputation:
10
Status:
New User
Location:
Last seen:
11 months, 1 week ago
Joined:
1 year, 9 months ago
Email:
a*************@gmail.com

Posts by amitunited0532

<prev • 41 results • page 1 of 5 • next >
0
votes
2
answers
4.9k
views
2
answers
Comment: C: How to get the alignment summary of HISAT2
... Can I find alignment summary after completing job, I mean from SAM file ? ...
written 12 months ago by amitunited053210
2
votes
0
answers
703
views
0
answers
Problem in analysis of Ballgown output by R (why q value are same in result ? )
... Hello, I have performed an RNAseq experiment, for which I used HISAT2 for the alingment, Stringtie for the assembly and the R package Ballgown for the Differential Expression (DE) analysis. After generation of differential expression table, I found q value is mostly same for all genes which is give ...
R ballgown differential expression (de) analysis written 13 months ago by amitunited053210 • updated 13 months ago by ATpoint25k
5
votes
0
answers
403
views
5 follow
0
answers
(Closed) Gene enrichment analysis
... Please suggest better tools for Gene ontology or enrichment analysis for DEG. ...
gene gene ontology gene enrichment analysis written 14 months ago by amitunited053210
0
votes
1
answer
2.3k
views
1
answers
Comment: C: (ERR): bowtie2-align exited with value 1
... Use Hisat2, it is better and fast. or If you have better computational facility, go for STAR aligner. (Required at least 32GB RAM) I don't recommend Bowtie2 or tophat for your work. All the best ...
written 14 months ago by amitunited053210
0
votes
0
answers
790
views
0
answers
Comment: C: R package installtion error
... How can get administrator permission in R studio? ...
written 15 months ago by amitunited053210
3
votes
0
answers
790
views
5 follow
0
answers
(Closed) R package installtion error
... When i gonna install packages it showing error like this. trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/survival_2.42-3.zip' Content type 'application/zip' length 4396605 bytes (4.2 MB) downloaded 4.2 MB trying URL 'https://bioconductor.org/packages/3.3/bioc/bin/ ...
r studio R bioconductor r packages written 15 months ago by amitunited053210 • updated 15 months ago by finswimmer12k
0
votes
1
answer
460
views
1
answers
Comment: C: Mapsplice 2 error
... I kept all files in one folder and also checked command which suggested. Again showed same error. ...
written 15 months ago by amitunited053210
0
votes
1
answer
460
views
1
answer
Mapsplice 2 error
... When running this command it shows error like this, I have all file in One folder. Please help me to resolve this problem mapsplice.py -o outfuse --fusion --min-fusion-distance 200 -c bowtie2index.fa -x bowtie2index -1 SRR087416.fastq_filtered ---------------------------------------- ...
ngs data analysis rna seq fusion gene written 15 months ago by amitunited053210 • updated 15 months ago by EagleEye6.5k
0
votes
1
answer
407
views
1
answers
Comment: C: Mapsplice commands for fusion gene and which file used ?
... Output of mapsplice. [Sat Aug 4 12:29:43 2018] Beginning Mapsplice run (MapSplice v2.2.0) [Sat Aug 4 12:29:43 2018] Bin directory: /home/prashant/anaconda2/bin/ [Sat Aug 4 12:29:43 2018] Preparing output location outputfusegene/ [Sat Aug 4 12:29:43 2018] Checking files or directory: SRR085725. ...
written 15 months ago by amitunited053210
1
vote
1
answer
407
views
1
answer
Mapsplice commands for fusion gene and which file used ?
... I have confused Which file used as reference genome (.fasta, fa, gtf, etc.) Please tell me about exact command with example, if possible. ...
mapsplice fusion gene rna-seq written 15 months ago by amitunited053210 • updated 15 months ago by archana.bioinfo87170

Latest awards to amitunited0532

Popular Question 14 months ago, created a question with more than 1,000 views. For CondaHTTPError: HTTP 000 CONNECTION FAILED

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1804 users visited in the last hour