User: santhoshhegde278

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Posts by santhoshhegde278

<prev • 9 results • page 1 of 1 • next >
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Comment: C: blast using python
... It is not working. I am getting same error. ...
written 2.8 years ago by santhoshhegde2780
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Comment: C: blast using python
... thank you very much.I will try this ...
written 2.8 years ago by santhoshhegde2780
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blast using python
... hello, I am beginner of python I have two dna sequences in fasta format. I want to blast these two sequences.can anyone suggest me some solution in python. I have used NcbiblastnCommandline. but it is not worked. from Bio.Blast.Applications import NcbiblastpCommandline from StringIO import ...
sequence alignment written 2.8 years ago by santhoshhegde2780 • updated 2.8 years ago by User000410
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Comment: A: Blast Two Sequences
... when I am working on the above code I got this error Traceback (most recent call last): File "F:\python-implement-fast-BLAST-Basic-Local-Alignment-Search-Tool-master\my blast.py", line 18, in output = NcbiblastpCommandline(query="F:\python-implement-fast-BLAST-Basic-Local-Alignme ...
written 2.8 years ago by santhoshhegde2780 • updated 2.8 years ago by genomax92k
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Comment: C: Genome DNA sequence pattern matching
... Thank you very much for your reply ...
written 2.8 years ago by santhoshhegde2780
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Comment: C: Genome DNA sequence pattern matching
... Is ANY mapper a Application or a online based? ...
written 2.8 years ago by santhoshhegde2780
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Comment: C: Genome DNA sequence pattern matching
... Thank you for your kind reply ...
written 2.8 years ago by santhoshhegde2780
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Genome DNA sequence pattern matching
... I have a genome sequence in fasta format.As well as I have a DNA pattern.I want to search this patern in the genome.I want just the matching gene header.How to code it in python?can anyone please suggest me? ...
genome written 2.8 years ago by santhoshhegde2780 • updated 2.8 years ago by Macspider3.3k
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Answer: A: Find Sequences In Fasta File From List Of Id'S
... I have a genome in fasta format and I have a sequence of length 5000bp I want to find if the sequence is present in that genome or not? If it present then what is the exact position of that sequence in genome or overlapping gene id? How to get it in python? please can anyone suggest me ...
written 2.8 years ago by santhoshhegde2780

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