User: M.Nadeem Khan

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Posts by M.Nadeem Khan

<prev • 9 results • page 1 of 1 • next >
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primers for whole metagenome
... Hello All I want to do amplify all the bacterail genomic contents present in environmental samples. What kind of primers I have to use? Primers used for 16s are enough for this procedure? or I have to desgin special type of primers? ...
genome sequencing written 8 weeks ago by M.Nadeem Khan0 • updated 2 days ago by Fabio Marroni2.0k
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Comment: C: Computational tools and softwares
... Thank you very much dear ...
written 10 weeks ago by M.Nadeem Khan0
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Comment: C: Computational tools and softwares
... Thank you dear karthic, yes you are right mostly there is a solution to the issues. I am doing a project "Pan-genome analysis of lactic acid bacteria". The Higher Education Commision of my country is paying for the said project and they have given me 162 USD for software purchasing for the current m ...
written 10 weeks ago by M.Nadeem Khan0
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Computational tools and softwares
... Dear All Hope you all are fine and good. I am new to the computational world but I have to use this till completion of my Ph.D. project. I have to work on the structural and functional genomics of prokaryotes. I have a specified budget to purchase the software. Now its the beginning and I am unfami ...
genome alignment sequencing written 11 weeks ago by M.Nadeem Khan0 • updated 11 weeks ago by karthic90
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Comment: C: Conversion of Fasta file
... Dear Sej Modha.. I want to submit my data to the SRA portal and it accepts only FASTQ. I have scores but cannot add these ...
written 4 months ago by M.Nadeem Khan0
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Comment: C: Conversion of Fasta file
... I know this. thanks for trying to help me out. ...
written 4 months ago by M.Nadeem Khan0
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Comment: C: Conversion of Fasta file
... Dear Carlo Yague Thanks for your reply. I have the QAUL file too but as I mentioned early, am a beginner to the computational biology. I don't know how to convert. Is there any tool which can do this? I tried online tools but failed. or is there any such sequence which I could use as a model and do ...
written 4 months ago by M.Nadeem Khan0
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Conversion of Fasta file
... Hello Folks!! Hope all of you are fine, doing well and everything around you is going well. I have a FASTA file of about 1GB that contains 16s sequences of different bacterial strains. I want to submit my data to NCBI where the only FASTQ format is accepted. I want to change the format but i don't k ...
genome sequence tool sequencing written 4 months ago by M.Nadeem Khan0 • updated 4 months ago by RamRS19k
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Fasta file display and edition
... Dear all. I have a large file almost 1.2 GB, having fasta sequence of different samples. I want to extract sequences sample-wise. I faced problems in its opening. EmEditor did it well. Let me know if there any software or tool which can do it. because doing manually it takes too much (in days even ...
genome sequence next-gen written 5 months ago by M.Nadeem Khan0

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