User: baldauf

gravatar for baldauf
baldauf20
Reputation:
20
Status:
New User
Location:
Last seen:
3 weeks, 4 days ago
Joined:
8 months, 1 week ago
Email:
b******@uni-bonn.de

Posts by baldauf

<prev • 8 results • page 1 of 1 • next >
0
votes
0
answers
142
views
0
answers
Consensus WGCNA: gene only of one data set present in modules
... Hi there, I have two data sets of genes (Exprdata_H and Exprdata_P), which I used to construct a consensus WGCNA following the tutorial by P. Langfelder and S. Horvath. Prior to generate the multiExpr data set, I separately filtered for both data sets the highly variable genes using the following co ...
wgcna multiexpr rna-seq written 3 months ago by baldauf20
0
votes
0
answers
209
views
0
answers
Comment: C: Consensus WGCNA: differentially connected genes
... ok, thanks! I will have a look at these tools and try ;) ...
written 3 months ago by baldauf20
0
votes
0
answers
209
views
0
answers
Comment: C: Consensus WGCNA: differentially connected genes
... I am not sure how I should define "differentially connected genes". If I understood correctly, than the ones which show up in the preserved consensus modules in both data sets are not differentially connected (because of the word "preserved"). Or am I wrong? So, according to these assumptions of min ...
written 4 months ago by baldauf20
2
votes
0
answers
209
views
0
answers
Consensus WGCNA: differentially connected genes
... Hi, I am still trying to apply the consensus WGCNA to my own data following the Tutorial written by Peter Langfelder and Steve Horvath. I managed to draw the preservation heatmap etc, which corresponds to Figure 1 in the Tutorial II.5 (https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpack ...
wgcna rna-seq written 4 months ago by baldauf20 • updated 3 months ago by Biostar ♦♦ 20
0
votes
1
answer
350
views
1
answers
Comment: C: Consensus WGCNA: soft-threshold power selection
... Ok, thank you very much! I will repeat the analysis with the different power settings, but how would I know if there would be an effect on the overall results? ...
written 4 months ago by baldauf20
0
votes
1
answer
350
views
1
answers
Comment: C: Consensus WGCNA: soft-threshold power selection
... Thanks for your response! Does your "virtually always 6" only refers to the data of the tutorials, or do you mean (or the person you know) that for all data sets in general the soft thresholding power is always 6? For my data (see figure: https://ibb.co/eyMHJT ), these inflexion points are not as cl ...
written 4 months ago by baldauf20
1
vote
1
answer
350
views
1
answer
Consensus WGCNA: soft-threshold power selection
... Hi, I just started to get familiar with WGCNA and I am trying to apply the tutorials written by Peter Langfelder and Steve Horvath for the Consensus WGCNA on my data. Can any one tell me how I obtain the powerEstimate of the "pickSoftThreshold" for both of my data sets included in the multiExpr Set, ...
consensus wgcna soft-thresholding power written 4 months ago by baldauf20 • updated 4 months ago by Kevin Blighe30k
1
vote
1
answer
1.8k
views
1
answers
Answer: A: WGCNA: Output gene lists from consensus network modules
... I found a solution in the this Tutorial "II.4. Relating consensus module to external microarray sample traits and exporting the results of network analysis" by Langfelder and Horvath. https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/index.html ...
written 8 months ago by baldauf20

Latest awards to baldauf

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1155 users visited in the last hour