User: baldauf

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baldauf10
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Posts by baldauf

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Consensus WGCNA: differentially connected genes
... ok, thanks! I will have a look at these tools and try ;) ...
written 2 days ago by baldauf10
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Comment: C: Consensus WGCNA: differentially connected genes
... I am not sure how I should define "differentially connected genes". If I understood correctly, than the ones which show up in the preserved consensus modules in both data sets are not differentially connected (because of the word "preserved"). Or am I wrong? So, according to these assumptions of min ...
written 3 days ago by baldauf10
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Consensus WGCNA: differentially connected genes
... Hi, I am still trying to apply the consensus WGCNA to my own data following the Tutorial written by Peter Langfelder and Steve Horvath. I managed to draw the preservation heatmap etc, which corresponds to Figure 1 in the Tutorial II.5 (https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpack ...
wgcna rna-seq written 8 days ago by baldauf10
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Comment: C: Consensus WGCNA: soft-threshold power selection
... Ok, thank you very much! I will repeat the analysis with the different power settings, but how would I know if there would be an effect on the overall results? ...
written 10 days ago by baldauf10
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Comment: C: Consensus WGCNA: soft-threshold power selection
... Thanks for your response! Does your "virtually always 6" only refers to the data of the tutorials, or do you mean (or the person you know) that for all data sets in general the soft thresholding power is always 6? For my data (see figure: https://ibb.co/eyMHJT ), these inflexion points are not as cl ...
written 10 days ago by baldauf10
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Consensus WGCNA: soft-threshold power selection
... Hi, I just started to get familiar with WGCNA and I am trying to apply the tutorials written by Peter Langfelder and Steve Horvath for the Consensus WGCNA on my data. Can any one tell me how I obtain the powerEstimate of the "pickSoftThreshold" for both of my data sets included in the multiExpr Set, ...
consensus wgcna soft-thresholding power written 14 days ago by baldauf10 • updated 14 days ago by Kevin Blighe21k
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Answer: A: WGCNA: Output gene lists from consensus network modules
... I found a solution in the this Tutorial "II.4. Relating consensus module to external microarray sample traits and exporting the results of network analysis" by Langfelder and Horvath. https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/index.html ...
written 4 months ago by baldauf10

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