User: shahroze786
shahroze786 • 0
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Posts by shahroze786
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C: Modifying Edge Weights in WGCNA
... Yeah my mistake, couldn't figure out how to fix it. ...
written 10 months ago by
shahroze786 • 0
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A: Modifying Edge Weights in WGCNA
... Yes, this is a follow up question I guess, I learned a little bit since the last. Thanks for your reply on that.
So here's the thing, I definitely realize how flexible network construction can be, but there is some confusion. The pipeline `WGCNA` follows is correlation matrix -> adjacency matrix ...
written 10 months ago by
shahroze786 • 0
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... I am creating a gene expression network and this post is mainly to have someone check my methodology but also I have a question regarding the edge weights that are created using a soft threshold.
My plan is to use gene expression data to create a similarity matrix using Pearson's Correlation. Then ...
written 10 months ago by
shahroze786 • 0
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10 months ago by
Biostar ♦♦ 20
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C: Weighted Gene Expression Network
... For someone like me the flexibility is sort of the problem, there's always an opportunity to make a change and observe the impact. Quick question, not sure about your particular expertise, but do you know the differences between constructing a gene expression network from Pearson correlation or Eucl ...
written 10 months ago by
shahroze786 • 0
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... I have a basic network question, I've been trying to research the typical methodology behind building a gene expression network. As I understand it so far the steps are as follows: Create pearson correlation matrix -> create adjacency matrix (weighted or unweighted) -> create topological overl ...
written 10 months ago by
shahroze786 • 0
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10 months ago by
Kevin Blighe ♦ 37k
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C: Expression Network vs PPI Network
... Do you know where I could download mouse brain PPI data? I've found sources online but most seem to just provide a web interface to interact with the API... ...
written 12 months ago by
shahroze786 • 0
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... I have a general question regarding the type of information that can be provided by different types of networks. What are the advantages of constructing an expression network for analysis compared to a PPI network? What will one give more in regards to studying a disease for example? If I use basal ...
written 12 months ago by
shahroze786 • 0
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12 months ago by
fishgolden • 360
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... Currently looking for advice on the best way to collect orthology data for E. Coli. I haven't used OMA before but the goal is to basically acquire a gene list for all E. Coli strains then map those genes to Orthology IDs. I downloaded the AllAll data from OMA for the E. Coli strains but there's a lo ...
written 12 months ago by
shahroze786 • 0
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12 months ago by
genomax ♦ 62k
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