User: jiumeng66

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jiumeng6630
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Posts by jiumeng66

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Comment: C: Obtain chromosome, position, and alleles based on a list of SNP names
... Thank you, it is a little bit complex. I will try.^_^ ...
written 5 months ago by jiumeng6630
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Comment: C: Obtain chromosome, position, and alleles based on a list of SNP names
... sorry to reply lately, I have download it just now with your help. Thank you very much. ...
written 5 months ago by jiumeng6630
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Comment: C: How I can obtain the chromosome, position and alleles information based on a lis
... Thank you, but where can I download the dbSNP? ...
written 5 months ago by jiumeng6630
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Comment: C: How I can obtain the chromosome, position and alleles information based on a lis
... thank you so much. but in my terminal, the command return "-bash: mysql: command not found". Dose it mean that some tool need be installed? ...
written 5 months ago by jiumeng6630
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Obtain chromosome, position, and alleles based on a list of SNP names
... I have a SNP list (including **3660** SNPs), which have only the name, like *rs41457244*. Now I need the other information of the SNPs, such as chromosomes, positions (hg19), and alleles. What can I do? The following is part of my SNP list: rs2088175 rs2983855 rs2821958 rs4146 ...
snp written 5 months ago by jiumeng6630 • updated 5 months ago by igor6.6k
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Answer: A: Why lack of SNPs within a window of 3.06 million bp (58887738 - 61949597) in chr
... I have checked the chr7. There are also no SNPs in the region of centromere. It looks that the centromere regions of all chromosomes have no SNPs. It's an interesting phenomenon for me. ...
written 6 months ago by jiumeng6630
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Comment: C: Why lack of SNPs within a window of 3.06 million bp (58887738 - 61949597) in chr
... Yes, I have checked just now. This is the region of centromere. Thank you very much. ...
written 6 months ago by jiumeng6630
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Why lack of SNPs within a window of 3.06 million bp (58887738 - 61949597) in chromosome 6?
... I am doing GWAS, and I found that there are no SNPs within a window of 3.06 million bp (58887738 - 61949597, for example, in HapMap3) in chromosome 6, in almost all dataset, including 1000 genome and Hapmap3 (as shown in the attached figure), and of course in my own datasets. Could someone tell me w ...
snp written 6 months ago by jiumeng6630 • updated 6 months ago by greeshmathulasi10
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How to keep the same alleles order between bim file and vcf file?
... Hi, I am trying to convert bed/bim/fam files to vcf file using plink. However, I found that some alleles orders changed. For example, the allele order of rs1877179 in bim file is G/A, but changed to A/G in vcf file. But I need keep the same allele order between bim file and vcf file. I have tried ad ...
plink snp written 7 months ago by jiumeng6630 • updated 6 months ago by h.mon19k
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Comment: C: How I can know what coordinates my snp data?
... Thank you so much. It's very kind of you to reply me in such a detailed way. ...
written 7 months ago by jiumeng6630

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