User: chadapohn.chaosrikul

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Posts by chadapohn.chaosrikul

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Interpreting phased data from Beagle
... Dear all, I'm trying to investigate how Beagle works when phasing with a reference panel and without a reference panel. I've got phased data of unrelated individuals that contain missing markers from these two commands (I'm using Beagle 3.3): 1) The first one goes with a reference panel. java ...
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Comment: C: Phasing without a reference panel
... I've already tried both Beagle and SHAPEIT. Thank you for your suggestions. ...
written 8 months ago by chadapohn.chaosrikul0
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Comment: C: Phasing without a reference panel
... Thank you for your help! I'd like to know if I used SHAPEIT without a reference (by not specify --input-ref option) Does it use the default reference e.g 1000GP or use MCMC algorithm to estimate haplotypes instead? ...
written 9 months ago by chadapohn.chaosrikul0
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Phasing without a reference panel
... Hi all, I'm trying to make my own cohort from genotypes like HapMap project. I would like to know if there are any phasing tools which contain options for phasing genotypes when there's no reference panel? Thank you. ...
hapmap population genotype phasing written 9 months ago by chadapohn.chaosrikul0 • updated 9 months ago by Wietje150

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