User: chadapohn.chaosrikul

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Posts by chadapohn.chaosrikul

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Interpreting phased data from Beagle
... Dear all, I'm trying to investigate how Beagle works when phasing with a reference panel and without a reference panel. I've got phased data of unrelated individuals that contain missing markers from these two commands (I'm using Beagle 3.3): 1) The first one goes with a reference panel. java ...
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Comment: C: Phasing without a reference panel
... I've already tried both Beagle and SHAPEIT. Thank you for your suggestions. ...
written 11 months ago by chadapohn.chaosrikul0
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Comment: C: Phasing without a reference panel
... Thank you for your help! I'd like to know if I used SHAPEIT without a reference (by not specify --input-ref option) Does it use the default reference e.g 1000GP or use MCMC algorithm to estimate haplotypes instead? ...
written 12 months ago by chadapohn.chaosrikul0
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Phasing without a reference panel
... Hi all, I'm trying to make my own cohort from genotypes like HapMap project. I would like to know if there are any phasing tools which contain options for phasing genotypes when there's no reference panel? Thank you. ...
hapmap population genotype phasing written 12 months ago by chadapohn.chaosrikul0 • updated 12 months ago by Wietje180

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