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Comment: Comment: Polishing raw nanopore reads with Pacbio
10 weeks ago by samuel.a.odonnell ▴ 590
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0
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593
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Comment: Comment: Polishing raw nanopore reads with Pacbio
10 weeks ago by samuel.a.odonnell ▴ 590
1
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5
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593
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Polishing raw nanopore reads with Pacbio
polishing assembly
10 weeks ago by samuel.a.odonnell ▴ 590
0
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0
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506
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Comment: Comment: Type of Pangenome Type/program to use for fungal isolates of the same species, b
3 months ago by samuel.a.odonnell ▴ 590
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1
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1.3k
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Comment: Comment: Phylogenetic tree from whole genome using BUSCO
4 months ago by samuel.a.odonnell ▴ 590
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2.5k
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Comment: Comment: The BUSCO assessment of the MAKER annotation results shows a low completeness
7 months ago by samuel.a.odonnell ▴ 590
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0
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691
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Comment: Comment: Assembly Question
9 months ago by samuel.a.odonnell ▴ 590
1
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0
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796
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Comment: Comment: Oxford Nanopore Sequencing Output Related
10 months ago by samuel.a.odonnell ▴ 590
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0
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1.3k
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Comment: Comment: Eukaryotic genome Assembly
11 months ago by samuel.a.odonnell ▴ 590
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1
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538
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Comment: Comment: genome assembly for a pathogens
11 months ago by samuel.a.odonnell ▴ 590
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1
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1.8k
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Comment: Comment: SPADES Result Comparison
12 months ago by samuel.a.odonnell ▴ 590
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0
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668
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Comment: Comment: Mismatch between number of reads in fastq and mapped reads
12 months ago by samuel.a.odonnell ▴ 590
1
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0
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2.5k
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Comment: Comment: Best practices in Fungal Genome Assembly
12 months ago by samuel.a.odonnell ▴ 590
1
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1
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2.5k
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Comment: Comment: Best practices in Fungal Genome Assembly
12 months ago by samuel.a.odonnell ▴ 590
1
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1
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2.5k
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Comment: Comment: Best practices in Fungal Genome Assembly
12 months ago by samuel.a.odonnell ▴ 590
1
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0
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2.5k
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Comment: Comment: Best practices in Fungal Genome Assembly
12 months ago by samuel.a.odonnell ▴ 590
1
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2
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2.3k
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Comment: Comment: Removing duplicates
14 months ago by samuel.a.odonnell ▴ 590
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1
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2.3k
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Comment: Comment: Removing duplicates
14 months ago by samuel.a.odonnell ▴ 590
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0
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1.2k
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Comment: Comment: Porechop demulitplexing of nanopore sequencing data and barcode bins for each sa
20 months ago by samuel.a.odonnell ▴ 590
1
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0
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4.7k
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Comment: Comment: Short Read Data Genome Assembly
21 months ago by samuel.a.odonnell ▴ 590
1
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1
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2.3k
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Comment: Comment: The GATK "The given bam input has no sample names." error
22 months ago by samuel.a.odonnell ▴ 590
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0
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1.5k
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
22 months ago by samuel.a.odonnell ▴ 590
0
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1
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1.5k
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
22 months ago by samuel.a.odonnell ▴ 590
0
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1
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862
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Comment: Comment: Expect heterozygous variant from reads
23 months ago by samuel.a.odonnell ▴ 590
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0
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1.5k
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Comment: Comment: vg: Mapping fewer reads to a genome graph than a linear reference
2.1 years ago by samuel.a.odonnell ▴ 590
1
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1
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2.6k
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Comment: Comment: How to rerun Guppy Basecalling (with both fast5_pass and fast5_fail)
2.2 years ago by samuel.a.odonnell ▴ 590
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0
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1.7k
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Comment: Comment: MissAssembly Correction
2.3 years ago by samuel.a.odonnell ▴ 590
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1
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1.7k
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Comment: Comment: MissAssembly Correction
2.3 years ago by samuel.a.odonnell ▴ 590
0
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0
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797
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Answer: Answer: scaffold assembly inro chromosomal assembly using reference genome
2.4 years ago by samuel.a.odonnell ▴ 590
2
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1
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1.8k
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Comment: Comment: Problem with NextDenovo fungal assembly
2.4 years ago by samuel.a.odonnell ▴ 590
1
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0
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677
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Comment: Comment: Tools for annotating predicted genes?
2.4 years ago by samuel.a.odonnell ▴ 590
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0
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2.3k
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Comment: Comment: minimap2, before or after assembly?
2.5 years ago by samuel.a.odonnell ▴ 590
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0
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1.2k
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Comment: Comment: Filtering mitochondrion reads from FastQ files
2.6 years ago by samuel.a.odonnell ▴ 590
1
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0
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2.0k
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Comment: Comment: How to fix long read from ONT : ERROR: Invalid char while reading fastq.gz file
2.6 years ago by samuel.a.odonnell ▴ 590
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0
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2.0k
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Comment: Comment: Low basecalling of raw ONT data
2.7 years ago by samuel.a.odonnell ▴ 590
0
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0
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1.6k
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Comment: Comment: Assembly size is double the genome size despite specifying --genome-size in flye
2.7 years ago by samuel.a.odonnell ▴ 590
2
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1
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929
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Comment: Comment: Why SNPs with read depth > 100 or 200 were removed?
2.7 years ago by samuel.a.odonnell ▴ 590
2
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0
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1.4k
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Comment: Comment: Help with geom_dotplot() script
2.7 years ago by samuel.a.odonnell ▴ 590
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0
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1.1k
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Comment: Comment: How can I make a reference genome from multiple genomes?
2.8 years ago by samuel.a.odonnell ▴ 590
4
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1
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853
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assembly based phylogeny
whole-genome phylogenetics assembly
updated 2.8 years ago by ★ 1.6k • written 2.8 years ago by ▴ 590
2
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1
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1.3k
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Answer: Answer: How do I input one fasta file for an entire reference genome?
2.8 years ago by samuel.a.odonnell ▴ 590
1
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1
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847
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Comment: Comment: Unexpected coverage across genome
2.8 years ago by samuel.a.odonnell ▴ 590
1
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0
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1.3k
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Comment: Comment: ONT multiplexing not generating equal amount of data for each barcodes
2.8 years ago by samuel.a.odonnell ▴ 590
0
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0
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1.4k
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Comment: Comment: Convert fasta to Fastq/bam
2.8 years ago by samuel.a.odonnell ▴ 590
0
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0
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1.4k
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Comment: Comment: Variant calling for scaffold genome
3.1 years ago by samuel.a.odonnell ▴ 590
1
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1
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1.3k
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Comment: Comment: A question about SPAdes
3.1 years ago by samuel.a.odonnell ▴ 590
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1
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1.6k
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Comment: Comment: Method to fill N gaps with de novo assembly
3.1 years ago by samuel.a.odonnell ▴ 590
0
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0
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896
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Comment: Comment: comparing and aligning 2 de novo genomes
3.1 years ago by samuel.a.odonnell ▴ 590
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1
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896
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Comment: Comment: comparing and aligning 2 de novo genomes
3.1 years ago by samuel.a.odonnell ▴ 590
0
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0
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1.8k
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Comment: Comment: Incomplete TE identification by repeatmasker
3.1 years ago by samuel.a.odonnell ▴ 590
126 results • Page 1 of 3
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