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Comment:
Comment: large number of contigs after assembly
2.6 years ago by
samuel.a.odonnell
▴ 520
1
vote
0
replies
3.5k
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Comment:
Comment: large number of contigs after assembly
2.6 years ago by
samuel.a.odonnell
▴ 520
0
votes
1
reply
3.3k
views
Comment:
Comment: How to align fastq files against a reference assembly
2.6 years ago by
samuel.a.odonnell
▴ 520
0
votes
1
reply
1.9k
views
Comment:
Comment: Is it possible to do mummerplot with reference and query sequences that have man
2.6 years ago by
samuel.a.odonnell
▴ 520
1
vote
0
replies
1.3k
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Comment:
Comment: fasta index file too big for genome browsers
2.6 years ago by
samuel.a.odonnell
▴ 520
0
votes
1
reply
3.3k
views
Comment:
Comment: How to align fastq files against a reference assembly
2.7 years ago by
samuel.a.odonnell
▴ 520
2
votes
1
reply
3.2k
views
Answer:
Answer: Hybrid assembly SPAdes (Ox. Nanopore + Illumina)
2.7 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
1.2k
views
Comment:
Comment: How to compare alignments(SAM/BAM files) aligned to different references?
2.7 years ago by
samuel.a.odonnell
▴ 520
1
vote
1
reply
979
views
Comment:
Comment: Variant calling from 5 MB regions coming from contrasting cultivars
2.7 years ago by
samuel.a.odonnell
▴ 520
1
vote
1
reply
1.2k
views
Comment:
Comment: How to compare alignments(SAM/BAM files) aligned to different references?
2.7 years ago by
samuel.a.odonnell
▴ 520
0
votes
1
reply
979
views
Comment:
Comment: Variant calling from 5 MB regions coming from contrasting cultivars
2.7 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
1.5k
views
Comment:
Comment: De novo genome assembly
2.7 years ago by
samuel.a.odonnell
▴ 520
1
vote
1
reply
673
views
Comment:
Comment: vcf file genotypes
2.7 years ago by
samuel.a.odonnell
▴ 520
1
vote
1
reply
1.3k
views
Comment:
Comment: Genome analysis and improvement
2.7 years ago by
samuel.a.odonnell
▴ 520
1
vote
1
reply
1.3k
views
Comment:
Comment: Genome analysis and improvement
2.7 years ago by
samuel.a.odonnell
▴ 520
1
vote
1
reply
1.3k
views
Comment:
Comment: Genome analysis and improvement
2.7 years ago by
samuel.a.odonnell
▴ 520
1
vote
0
replies
750
views
Comment:
Comment: How to get uniform data yields per barcode in nanopore sequencing
2.7 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
1.3k
views
Comment:
Comment: Generating a dotplot following ragtag scaffolding
2.8 years ago by
samuel.a.odonnell
▴ 520
0
votes
1
reply
1.7k
views
Comment:
Comment: Flye assembly, increased coverage results in decreased N50
2.8 years ago by
samuel.a.odonnell
▴ 520
1
vote
1
reply
1.4k
views
Comment:
Comment: hifiasm assembled contigs alignment to a reference genome sequence
2.8 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
1.3k
views
Comment:
Comment: tool to identify genomic structural variations in completely sequenced prokaryot
2.8 years ago by
samuel.a.odonnell
▴ 520
1
vote
1
reply
1.4k
views
Comment:
Comment: hifiasm assembled contigs alignment to a reference genome sequence
2.8 years ago by
samuel.a.odonnell
▴ 520
0
votes
1
reply
1.3k
views
Comment:
Comment: How to curate the genome assemblies after polishing and scaffolding?
2.8 years ago by
samuel.a.odonnell
▴ 520
0
votes
2
replies
1.3k
views
Comment:
Comment: tool to identify genomic structural variations in completely sequenced prokaryot
2.8 years ago by
samuel.a.odonnell
▴ 520
0
votes
1
reply
1.3k
views
Comment:
Comment: tool to identify genomic structural variations in completely sequenced prokaryot
2.8 years ago by
samuel.a.odonnell
▴ 520
1
vote
1
reply
1.3k
views
Comment:
Comment: How to curate the genome assemblies after polishing and scaffolding?
2.8 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
1.1k
views
Comment:
Comment: Polishing PACBIO corrected assembly using ONT and ILLUMINA data (.fastq)
2.8 years ago by
samuel.a.odonnell
▴ 520
2
votes
1
reply
1.1k
views
Comment:
Comment: Polishing PACBIO corrected assembly using ONT and ILLUMINA data (.fastq)
2.8 years ago by
samuel.a.odonnell
▴ 520
1
vote
0
replies
977
views
Comment:
Comment: Scaffolding of bacterial genome assemblies
2.9 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
1.7k
views
Comment:
Comment: LOW BUSCO Score for De novo genome assembly
2.9 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
1.1k
views
Comment:
Comment: Problem creating a reference genome
2.9 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
1.5k
views
Comment:
Comment: RagTag assembly after spades
3.0 years ago by
samuel.a.odonnell
▴ 520
1
vote
0
replies
1.5k
views
Comment:
Comment: Variant calling from comparison of assembled genomes where there is only one r
3.0 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
2.2k
views
Comment:
Comment: Dealing with chimeric assembly contigs
3.1 years ago by
samuel.a.odonnell
▴ 520
0
votes
1
reply
2.2k
views
Comment:
Comment: Dealing with chimeric assembly contigs
3.1 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
2.2k
views
Answer:
Answer: visualize phased vcf file
3.1 years ago by
samuel.a.odonnell
▴ 520
3
votes
0
replies
9.9k
views
Answer:
Answer: samtools multithreads
3.1 years ago by
samuel.a.odonnell
▴ 520
0
votes
1
reply
1.3k
views
Comment:
C: structural variant discovery from highly mutated viral population using nanopore
3.1 years ago by
samuel.a.odonnell
▴ 520
1
vote
0
replies
2.3k
views
Comment:
C: Basecalling of Nanopore Raw file
3.1 years ago by
samuel.a.odonnell
▴ 520
0
votes
1
reply
2.3k
views
Comment:
C: mummerplot results interpretation
3.2 years ago by
samuel.a.odonnell
▴ 520
1
vote
2
replies
2.3k
views
Comment:
C: mummerplot results interpretation
3.2 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
1.8k
views
Answer:
A: extracting fastq's from a vcf file
3.2 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
605
views
Comment:
C: anyway to save contaminated samples?
3.2 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
912
views
Comment:
C: Assembly based structural variants call from bacterial genome
3.2 years ago by
samuel.a.odonnell
▴ 520
0
votes
1
reply
912
views
Comment:
C: Assembly based structural variants call from bacterial genome
3.2 years ago by
samuel.a.odonnell
▴ 520
1
vote
0
replies
668
views
Comment:
C: Strategy for sequencing genomes of nascent polyploid species
3.2 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
955
views
Comment:
C: structural variants from mauve
3.4 years ago by
samuel.a.odonnell
▴ 520
1
vote
0
replies
994
views
Comment:
C: Building pangenome reference
3.4 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
2.5k
views
Comment:
C: False positives in manta structural variant calling
3.4 years ago by
samuel.a.odonnell
▴ 520
0
votes
0
replies
2.5k
views
Comment:
C: Combining nanopore libraries
3.4 years ago by
samuel.a.odonnell
▴ 520
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