User: miss

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miss0
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Posts by miss

<prev • 6 results • page 1 of 1 • next >
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Filtering VCF with python
... Hi, I extracted informations that I need from my vcf file and one line of it looks like this: X 126165205 . T G DCAF12L2 synonymous_SNV p.P240P 0.4172 0.4089 0.543046 1/1 25 0 25 1/1 20 0 20 the line represents respectively: chromosome, position, ID, ref, alt, gene name, exonic function, AAchange ...
vcf python written 9 months ago by miss0 • updated 9 months ago by Kevin Blighe33k
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Comment: C: parsing vcf file
... Thank you for suggestion, that way it would be much easier :) ...
written 9 months ago by miss0
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Comment: C: parsing vcf file
... Thank you very much and sorry for bad error description ...
written 9 months ago by miss0
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Comment: C: parsing vcf file
... Thank you so much it is perfect! And I understand, thank you for comments also!! ...
written 9 months ago by miss0
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Comment: C: parsing vcf file
... Thank you so much, it is working but sadly I have to do it with python script.. ...
written 9 months ago by miss0
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parsing vcf file
... I have VCF file and part of it looks like this: ;Gene.refGene=NONE,DDX11L1;GeneDetail.refGene=dist\x3dNONE\x3bdist\x3d1826;ExonicFunc.refGene=.;AAChange.refGene=.; I need to extract `Gene.refGene=NONE,DDX11L1` which is between semicolons, I also need to extract `ExonicFunc.refGene=.` and `AAC ...
vcf python written 9 months ago by miss0 • updated 9 months ago by RamRS19k

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