User: audrahuffmeyer

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Posts by audrahuffmeyer

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Empty output file with Kissplice2refgenome
... Hi! I am back again with another kissplice related question. I ran kissplice successfully. The program identified approx 64,000 snps (0a.fa) and approx 1800 alternative splicing events (1.fa). I mapped both files with STAR and then used kissplice2refgenome. I did not get any error notices, as far ...
kissplice2refgenome kissplice written 4 months ago by audrahuffmeyer0 • updated 4 months ago by leandro.ishi.lima70
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Comment: C: Kissplice "Finding BCCs" and no output fa or tsv files
... Thank you! This solved the problem! Best, Audra ...
written 4 months ago by audrahuffmeyer0
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Kissplice "Finding BCCs" and no output fa or tsv files
... I am running the kissplice program on 8 fastq files. Everything runs until "Finding the BCCs" (see summary log below). Then the program stops and there is no output. I do not get any tsv files. This has happened twice now, do I need to change the `--timeout` parameters? Thanks in advance! [09: ...
twas kissplice written 4 months ago by audrahuffmeyer0 • updated 4 months ago by leandro.ishi.lima70

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