User: limin201709

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limin20170910
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Posts by limin201709

<prev • 4 results • page 1 of 1 • next >
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hierarchical cluster of drug treatment after correlation analysis
... Hi, I am doing a correlation between one drug treatment and several other drug treatments, So I got a dataframe would be like the colname are the drug name and rowname are gene name, values are correlation coefficient, When I performed the hierarchical clustering on the data frame, because I want ...
cluster R correlation written 23 months ago by limin20170910 • updated 23 months ago by Kevin Blighe56k
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k means for differential gene cluster
... Hi, I am analysising the data after RNA seq, and want to plot the clusters of gene expression generated by the k-means algorithm. And the column of the data is time series. How should I do? my thought is first performing the k means algorithm and follow by the label by k means to plot the image one ...
cluster R k-means rna-seq written 2.1 years ago by limin20170910
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Comment: C: DESeq2: before differential analysis
... sorry, it is to avoid zero counts. ...
written 2.1 years ago by limin20170910
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DESeq2: before differential analysis
... I was doing RNA seq data process, and I would like to normalize the raw count and +0.1 to avoid the zero log2 fold change. But if I +1 to normalize counts data, it becomes a matric and how can I continue the pipeline. library(DESeq2) L3Ddata = FG_20141202_TF_20160315_aspFumA1163_RNA_seq[,13 ...
R rna-seq written 2.1 years ago by limin20170910 • updated 2.1 years ago by Devon Ryan94k

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