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Mapping metatranscriptomics rRNA reads to MAG 16S rRNA genes
RNA-Seq
16S rRNA
mapping
metatranscriptomics
updated 3.8 years ago by
Biostar
20 • written 4.6 years ago by
dark.lord
▴ 30
0
votes
0
replies
728
views
Is there a way to place short reads within MEGA software?
short reads
phylogenetics
MEGA
pplacer
4.5 years ago by
dark.lord
▴ 30
0
votes
0
replies
2.3k
views
Comment:
C: How do I decide the mapping quality score in featureCounts?
4.6 years ago by
dark.lord
▴ 30
1
vote
2
replies
2.3k
views
How do I decide the mapping quality score in featureCounts?
featureCounts
quality score
rna-seq
4.6 years ago by
dark.lord
▴ 30
0
votes
0
replies
1.8k
views
Comment:
C: Recent metatranscriptomics workflow
6.3 years ago by
dark.lord
▴ 30
0
votes
2
replies
1.8k
views
Recent metatranscriptomics workflow
metatranscriptomics
workflow
kallisto
6.3 years ago by
dark.lord
▴ 30
0
votes
0
replies
9.2k
views
Comment:
A: Getting average fragment length for single end reads
6.4 years ago by
dark.lord
▴ 30
0
votes
0
replies
4.0k
views
Comment:
C: Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
6.5 years ago by
dark.lord
▴ 30
0
votes
1
reply
4.0k
views
Comment:
C: Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
6.5 years ago by
dark.lord
▴ 30
3
votes
7
replies
4.0k
views
Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
16S rRNA
Assembly
SPAdes
reago
6.5 years ago by
dark.lord
▴ 30
0
votes
1
reply
4.0k
views
Comment:
C: Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
6.5 years ago by
dark.lord
▴ 30
0
votes
0
replies
88k
views
Comment:
C: How To Extract A Sequence From A Big (6Gb) Multifasta File ?
6.5 years ago by
dark.lord
▴ 30
1
vote
0
replies
4.5k
views
Answer:
A: The --contig option for SPAdes
6.5 years ago by
dark.lord
▴ 30
0
votes
0
replies
1.6k
views
Comment:
C: Metawatt [ERROR] String out of range in Six frame Pfam module
6.6 years ago by
dark.lord
▴ 30
0
votes
0
replies
1.6k
views
Comment:
C: Metawatt [ERROR] String out of range in Six frame Pfam module
6.6 years ago by
dark.lord
▴ 30
1
vote
4
replies
1.6k
views
Metawatt [ERROR] String out of range in Six frame Pfam module
assembly
binning
metawatt
updated 6.6 years ago by
Pierre Lindenbaum
164k • written 6.6 years ago by
dark.lord
▴ 30
3
votes
1
reply
1.3k
views
Plasmidome recovery from metagenomes: why and how?
plasmids
plasmid
metagenome
metagenomics
updated 6.6 years ago by
h.mon
35k • written 6.6 years ago by
dark.lord
▴ 30
0
votes
0
replies
2.3k
views
Answer:
A: Can I use both paired and single end reads in the same MEGAHIT run?
6.6 years ago by
dark.lord
▴ 30
0
votes
1
reply
2.3k
views
Can I use both paired and single end reads in the same MEGAHIT run?
megahit
Assembly
assembly
6.6 years ago by
dark.lord
▴ 30
0
votes
1
reply
5.4k
views
Comment:
C: Trimmomatic output: how to include unpaired reads in the assembly?
6.6 years ago by
dark.lord
▴ 30
8
votes
3
replies
5.4k
views
Trimmomatic output: how to include unpaired reads in the assembly?
megahit
trimmomatic
assembling
trimming
6.6 years ago by
dark.lord
▴ 30
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