User: nathan.yeung

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Comment: C: Couldn't Build Bowtie index with err = 1
... do you mean to use the bowtie-build command to index the fasta file provided by the UCSC hg19 genome.fa? ...
written 20 months ago by nathan.yeung0
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Couldn't Build Bowtie index with err = 1
... I'm trying to run tophat2 on RNA-seq data but it can't be accomplished as it continues to give the error message of `Couldn't Build Bowtie Index with err = 1`. The `genome.fa` and `genes.gtf` are both from the same source of UCSC hg19. Any advice and assistance would be greatly appreciated! Thank yo ...
software error alignment rna-seq written 21 months ago by nathan.yeung0 • updated 21 months ago by RamRS24k

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