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Comment: Comment: Alignment REST API
3 days ago by Shred ★ 1.0k
2
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2
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258
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Comment: Comment: Creating sample groups from a combination of genes for survival analysis
4 days ago by Shred ★ 1.0k
1
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1
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291
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Answer: Answer: API REST ALINGMENT
4 days ago by Shred ★ 1.0k
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397
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Comment: Comment: salmon output interpretation
20 days ago by Shred ★ 1.0k
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1
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2.3k
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Comment: Comment: GATK Mutect2 tumor mode
22 days ago by Shred ★ 1.0k
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1
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2.3k
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Comment: Comment: GATK Mutect2 tumor mode
23 days ago by Shred ★ 1.0k
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1
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2.3k
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Comment: Comment: GATK Mutect2 tumor mode
24 days ago by Shred ★ 1.0k
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1
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2.3k
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Comment: Comment: GATK Mutect2 tumor mode
25 days ago by Shred ★ 1.0k
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389
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Comment: Comment: Question: Design matrix (DESeq2)
28 days ago by Shred ★ 1.0k
1
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1
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251
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Comment: Comment: In silico evaluation of functional similarity across two sets of genes
4 weeks ago by Shred ★ 1.0k
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0
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338
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Answer: Answer: RNAseq matrix containing zero values
4 weeks ago by Shred ★ 1.0k
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1
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349
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Comment: Comment: How can I convert this pairwise format to fasta?
7 weeks ago by Shred ★ 1.0k
1
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0
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680
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Comment: Comment: Retrieve count table from bam file using genomic coordinates
10 weeks ago by Shred ★ 1.0k
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1
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680
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Comment: Comment: Retrieve count table from bam file using genomic coordinates
10 weeks ago by Shred ★ 1.0k
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1
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680
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Comment: Comment: Retrieve count table from bam file using genomic coordinates
10 weeks ago by Shred ★ 1.0k
2
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1
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525
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Answer: Answer: Snakemake Target rules may not contain wildcards.
3 months ago by Shred ★ 1.0k
0
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0
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224
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Answer: Answer: Change column order in vcf file
3 months ago by Shred ★ 1.0k
0
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1
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521
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Comment: Comment: What is the best time saving way to loop over column elements in pandas DF and r
4 months ago by Shred ★ 1.0k
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1
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521
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Answer: Answer: What is the best time saving way to loop over column elements in pandas DF and r
4 months ago by Shred ★ 1.0k
0
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0
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306
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Comment: Comment: Convert excel to json with python
4 months ago by Shred ★ 1.0k
2
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1
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263
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Answer: Answer: Get a vector of 0 and 1 using codon positions
4 months ago by Shred ★ 1.0k
0
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0
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309
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Comment: Comment: Index error in python
4 months ago by Shred ★ 1.0k
0
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1
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309
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Comment: Comment: Index error in python
4 months ago by Shred ★ 1.0k
0
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0
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226
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Answer: Answer: Match keys in json file with csv files
4 months ago by Shred ★ 1.0k
2
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1
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764
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Answer: Answer: Upset plot using python
4 months ago by Shred ★ 1.0k
0
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1
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369
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Comment: Comment: Clean data with pandas
5 months ago by Shred ★ 1.0k
2
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1
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369
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Answer: Answer: Clean data with pandas
5 months ago by Shred ★ 1.0k
0
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1
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500
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Comment: Comment: The conversion Ensembl ID into Gene symbol
5 months ago by Shred ★ 1.0k
0
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1
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290
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Comment: Comment: Benchmark data for variant calling assessment
5 months ago by Shred ★ 1.0k
1
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1
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812
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
5 months ago by Shred ★ 1.0k
0
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1
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812
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
5 months ago by Shred ★ 1.0k
1
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0
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333
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Comment: Comment: Running several rounds of the same rule in Snakemake
5 months ago by Shred ★ 1.0k
0
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1
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812
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Answer: Answer: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
5 months ago by Shred ★ 1.0k
1
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1
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296
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Comment: Comment: DEGseq - 3 conditions
5 months ago by Shred ★ 1.0k
0
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1
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296
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Comment: Comment: DEGseq - 3 conditions
5 months ago by Shred ★ 1.0k
0
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0
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356
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Comment: Comment: Htseq-count output file having a high number of __not_aligned
6 months ago by Shred ★ 1.0k
0
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1
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356
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Comment: Comment: Htseq-count output file having a high number of __not_aligned
6 months ago by Shred ★ 1.0k
2
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1
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806
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Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
6 months ago by Shred ★ 1.0k
2
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0
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502
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Answer: Answer: Get both somatic and germline mutations from tumor only sample?
6 months ago by Shred ★ 1.0k
1
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1
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401
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Answer: Answer: Why a gene with amplification in copy number shows downregulation in transcripto
6 months ago by Shred ★ 1.0k
3
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1
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757
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Comment: Comment: Variant identified, What next?
7 months ago by Shred ★ 1.0k
2
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0
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372
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Answer: Answer: How to create a fasta file using a list of DNA sequences data
7 months ago by Shred ★ 1.0k
1
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1
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537
views
Comment: Comment: Reading in input file into a Snakemake pipeline
7 months ago by Shred ★ 1.0k
3
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1
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537
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Answer: Answer: Reading in input file into a Snakemake pipeline
7 months ago by Shred ★ 1.0k
0
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0
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810
views
Comment: Comment: Cannot call haplotypes on bam
7 months ago by Shred ★ 1.0k
2
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1
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456
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Comment: Comment: Feature selection for a binary classifier using mixed cancer type samples
7 months ago by Shred ★ 1.0k
0
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1
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810
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Comment: Comment: Cannot call haplotypes on bam
7 months ago by Shred ★ 1.0k
0
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1
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810
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Comment: Comment: Cannot call haplotypes on bam
7 months ago by Shred ★ 1.0k
1
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1
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632
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Comment: Comment: is there any pipeline or best practices of detecting germline neoantigen?
8 months ago by Shred ★ 1.0k
1
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2
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632
views
Answer: Answer: is there any pipeline or best practices of detecting germline neoantigen?
8 months ago by Shred ★ 1.0k
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