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Comment: Comment: Alignment REST API
3 days ago by Shred ★ 1.0k
2
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2
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258
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Comment: Comment: Creating sample groups from a combination of genes for survival analysis
4 days ago by Shred ★ 1.0k
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1
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397
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Comment: Comment: salmon output interpretation
20 days ago by Shred ★ 1.0k
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1
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2.3k
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Comment: Comment: GATK Mutect2 tumor mode
22 days ago by Shred ★ 1.0k
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1
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2.3k
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Comment: Comment: GATK Mutect2 tumor mode
23 days ago by Shred ★ 1.0k
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1
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2.3k
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Comment: Comment: GATK Mutect2 tumor mode
24 days ago by Shred ★ 1.0k
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1
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2.3k
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Comment: Comment: GATK Mutect2 tumor mode
25 days ago by Shred ★ 1.0k
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0
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389
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Comment: Comment: Question: Design matrix (DESeq2)
28 days ago by Shred ★ 1.0k
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251
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Comment: Comment: In silico evaluation of functional similarity across two sets of genes
4 weeks ago by Shred ★ 1.0k
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1
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349
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Comment: Comment: How can I convert this pairwise format to fasta?
7 weeks ago by Shred ★ 1.0k
1
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0
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680
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Comment: Comment: Retrieve count table from bam file using genomic coordinates
10 weeks ago by Shred ★ 1.0k
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1
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680
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Comment: Comment: Retrieve count table from bam file using genomic coordinates
10 weeks ago by Shred ★ 1.0k
0
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1
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680
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Comment: Comment: Retrieve count table from bam file using genomic coordinates
10 weeks ago by Shred ★ 1.0k
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1
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521
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Comment: Comment: What is the best time saving way to loop over column elements in pandas DF and r
4 months ago by Shred ★ 1.0k
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306
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Comment: Comment: Convert excel to json with python
4 months ago by Shred ★ 1.0k
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309
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Comment: Comment: Index error in python
4 months ago by Shred ★ 1.0k
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1
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309
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Comment: Comment: Index error in python
4 months ago by Shred ★ 1.0k
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1
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369
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Comment: Comment: Clean data with pandas
5 months ago by Shred ★ 1.0k
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1
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500
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Comment: Comment: The conversion Ensembl ID into Gene symbol
5 months ago by Shred ★ 1.0k
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1
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290
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Comment: Comment: Benchmark data for variant calling assessment
5 months ago by Shred ★ 1.0k
1
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1
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812
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
5 months ago by Shred ★ 1.0k
0
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1
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812
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
5 months ago by Shred ★ 1.0k
1
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0
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333
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Comment: Comment: Running several rounds of the same rule in Snakemake
5 months ago by Shred ★ 1.0k
1
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1
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296
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Comment: Comment: DEGseq - 3 conditions
5 months ago by Shred ★ 1.0k
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1
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296
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Comment: Comment: DEGseq - 3 conditions
5 months ago by Shred ★ 1.0k
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0
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356
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Comment: Comment: Htseq-count output file having a high number of __not_aligned
6 months ago by Shred ★ 1.0k
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1
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356
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Comment: Comment: Htseq-count output file having a high number of __not_aligned
6 months ago by Shred ★ 1.0k
2
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1
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806
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Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
6 months ago by Shred ★ 1.0k
3
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1
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757
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Comment: Comment: Variant identified, What next?
7 months ago by Shred ★ 1.0k
1
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1
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537
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Comment: Comment: Reading in input file into a Snakemake pipeline
7 months ago by Shred ★ 1.0k
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0
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810
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Comment: Comment: Cannot call haplotypes on bam
7 months ago by Shred ★ 1.0k
2
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1
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456
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Comment: Comment: Feature selection for a binary classifier using mixed cancer type samples
7 months ago by Shred ★ 1.0k
0
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1
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810
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Comment: Comment: Cannot call haplotypes on bam
7 months ago by Shred ★ 1.0k
0
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1
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810
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Comment: Comment: Cannot call haplotypes on bam
7 months ago by Shred ★ 1.0k
1
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1
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632
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Comment: Comment: is there any pipeline or best practices of detecting germline neoantigen?
8 months ago by Shred ★ 1.0k
0
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1
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618
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Comment: Comment: Increased GC content after trimming RNAseq data
8 months ago by Shred ★ 1.0k
0
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0
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248
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Comment: Comment: Wildcards Snakemake using bedtools
9 months ago by Shred ★ 1.0k
1
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1
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956
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Comment: Comment: Running salmon in alignment mode?
9 months ago by Shred ★ 1.0k
0
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1
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523
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Comment: Comment: How to make predictions on genes not involved in a particular disease
9 months ago by Shred ★ 1.0k
0
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0
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490
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Comment: Comment: Which statistical test should be used for comparison of a single gene expression
10 months ago by Shred ★ 1.0k
0
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0
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467
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Comment: Comment: WGCNA functions not found
10 months ago by Shred ★ 1.0k
1
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1
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835
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Comment: Comment: For loop in R
10 months ago by Shred ★ 1.0k
0
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0
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517
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Comment: Comment: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
10 months ago by Shred ★ 1.0k
0
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0
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726
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Comment: Comment: Best transcriptome assembler
11 months ago by Shred ★ 1.0k
0
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1
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726
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Comment: Comment: Best transcriptome assembler
11 months ago by Shred ★ 1.0k
1
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0
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1.6k
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Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
11 months ago by Shred ★ 1.0k
1
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1
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1.5k
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Comment: Comment: How to get specific information from a list of PDB ID and save all in a spreadsh
12 months ago by Shred ★ 1.0k
1
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1
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554
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Comment: Comment: lncRNA analysis
12 months ago by Shred ★ 1.0k
0
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0
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346
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Comment: Comment: why Mutect2 calls some germline variants as somatic ones?
12 months ago by Shred ★ 1.0k
0
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0
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409
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Comment: Comment: 3' mRNAseq Bioinformatic Considerations (bulk RNAseq)
13 months ago by Shred ★ 1.0k
116 results • Page 1 of 3
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