Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
3.1k
views
Comment: Comment: GATK Mutect2 tumor mode
9 months ago by Shred ★ 1.4k
0
votes
1
reply
3.1k
views
Comment: Comment: GATK Mutect2 tumor mode
9 months ago by Shred ★ 1.4k
0
votes
1
reply
3.1k
views
Comment: Comment: GATK Mutect2 tumor mode
9 months ago by Shred ★ 1.4k
0
votes
0
replies
621
views
Comment: Comment: Question: Design matrix (DESeq2)
9 months ago by Shred ★ 1.4k
1
vote
1
reply
451
views
Comment: Comment: In silico evaluation of functional similarity across two sets of genes
9 months ago by Shred ★ 1.4k
1
vote
0
replies
548
views
Answer: Answer: RNAseq matrix containing zero values
9 months ago by Shred ★ 1.4k
0
votes
1
reply
543
views
Comment: Comment: How can I convert this pairwise format to fasta?
10 months ago by Shred ★ 1.4k
1
vote
0
replies
992
views
Comment: Comment: Retrieve count table from bam file using genomic coordinates
10 months ago by Shred ★ 1.4k
0
votes
1
reply
992
views
Comment: Comment: Retrieve count table from bam file using genomic coordinates
10 months ago by Shred ★ 1.4k
0
votes
1
reply
992
views
Comment: Comment: Retrieve count table from bam file using genomic coordinates
10 months ago by Shred ★ 1.4k
2
votes
1
reply
1.2k
views
Answer: Answer: Snakemake Target rules may not contain wildcards.
11 months ago by Shred ★ 1.4k
0
votes
0
replies
619
views
Answer: Answer: Change column order in vcf file
12 months ago by Shred ★ 1.4k
0
votes
1
reply
731
views
Comment: Comment: What is the best time saving way to loop over column elements in pandas DF and r
12 months ago by Shred ★ 1.4k
0
votes
1
reply
731
views
Answer: Answer: What is the best time saving way to loop over column elements in pandas DF and r
12 months ago by Shred ★ 1.4k
0
votes
0
replies
744
views
Comment: Comment: Convert excel to json with python
12 months ago by Shred ★ 1.4k
2
votes
1
reply
417
views
Answer: Answer: Get a vector of 0 and 1 using codon positions
12 months ago by Shred ★ 1.4k
0
votes
0
replies
513
views
Comment: Comment: Index error in python
12 months ago by Shred ★ 1.4k
0
votes
1
reply
513
views
Comment: Comment: Index error in python
12 months ago by Shred ★ 1.4k
0
votes
0
replies
349
views
Answer: Answer: Match keys in json file with csv files
13 months ago by Shred ★ 1.4k
2
votes
1
reply
1.7k
views
Answer: Answer: Upset plot using python
13 months ago by Shred ★ 1.4k
0
votes
1
reply
559
views
Comment: Comment: Clean data with pandas
13 months ago by Shred ★ 1.4k
2
votes
1
reply
559
views
Answer: Answer: Clean data with pandas
13 months ago by Shred ★ 1.4k
0
votes
1
reply
860
views
Comment: Comment: The conversion Ensembl ID into Gene symbol
13 months ago by Shred ★ 1.4k
0
votes
1
reply
466
views
Comment: Comment: Benchmark data for variant calling assessment
13 months ago by Shred ★ 1.4k
1
vote
1
reply
1.4k
views
Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
13 months ago by Shred ★ 1.4k
0
votes
1
reply
1.4k
views
Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
14 months ago by Shred ★ 1.4k
1
vote
0
replies
509
views
Comment: Comment: Running several rounds of the same rule in Snakemake
14 months ago by Shred ★ 1.4k
0
votes
1
reply
1.4k
views
Answer: Answer: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
14 months ago by Shred ★ 1.4k
1
vote
1
reply
522
views
Comment: Comment: DEGseq - 3 conditions
14 months ago by Shred ★ 1.4k
0
votes
1
reply
522
views
Comment: Comment: DEGseq - 3 conditions
14 months ago by Shred ★ 1.4k
0
votes
0
replies
592
views
Comment: Comment: Htseq-count output file having a high number of __not_aligned
14 months ago by Shred ★ 1.4k
0
votes
1
reply
592
views
Comment: Comment: Htseq-count output file having a high number of __not_aligned
14 months ago by Shred ★ 1.4k
2
votes
1
reply
1.2k
views
Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
14 months ago by Shred ★ 1.4k
2
votes
0
replies
1.0k
views
Answer: Answer: Get both somatic and germline mutations from tumor only sample?
15 months ago by Shred ★ 1.4k
1
vote
1
reply
539
views
Answer: Answer: Why a gene with amplification in copy number shows downregulation in transcripto
15 months ago by Shred ★ 1.4k
3
votes
1
reply
1.0k
views
Comment: Comment: Variant identified, What next?
15 months ago by Shred ★ 1.4k
2
votes
0
replies
588
views
Answer: Answer: How to create a fasta file using a list of DNA sequences data
16 months ago by Shred ★ 1.4k
1
vote
1
reply
812
views
Comment: Comment: Reading in input file into a Snakemake pipeline
16 months ago by Shred ★ 1.4k
3
votes
1
reply
812
views
Answer: Answer: Reading in input file into a Snakemake pipeline
16 months ago by Shred ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: Comment: Cannot call haplotypes on bam
16 months ago by Shred ★ 1.4k
2
votes
1
reply
611
views
Comment: Comment: Feature selection for a binary classifier using mixed cancer type samples
16 months ago by Shred ★ 1.4k
0
votes
1
reply
1.1k
views
Comment: Comment: Cannot call haplotypes on bam
16 months ago by Shred ★ 1.4k
0
votes
1
reply
1.1k
views
Comment: Comment: Cannot call haplotypes on bam
16 months ago by Shred ★ 1.4k
1
vote
1
reply
830
views
Comment: Comment: is there any pipeline or best practices of detecting germline neoantigen?
16 months ago by Shred ★ 1.4k
1
vote
2
replies
830
views
Answer: Answer: is there any pipeline or best practices of detecting germline neoantigen?
16 months ago by Shred ★ 1.4k
0
votes
1
reply
846
views
Comment: Comment: Increased GC content after trimming RNAseq data
16 months ago by Shred ★ 1.4k
3
votes
0
replies
665
views
Answer: Answer: Figuring out if a gene exists in a genome
16 months ago by Shred ★ 1.4k
2
votes
1
reply
665
views
Answer: Answer: Python pandas transforming int to float in gff subsetting
17 months ago by Shred ★ 1.4k
0
votes
0
replies
917
views
Answer: Answer: How to count the number of multimapped reads from a bam file?
17 months ago by Shred ★ 1.4k
0
votes
0
replies
381
views
Comment: Comment: Wildcards Snakemake using bedtools
17 months ago by Shred ★ 1.4k
226 results • Page 2 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6