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3
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513
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Answer: Answer: Figuring out if a gene exists in a genome
8 months ago by Shred ★ 1.0k
2
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1
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483
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Answer: Answer: Python pandas transforming int to float in gff subsetting
8 months ago by Shred ★ 1.0k
0
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0
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572
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Answer: Answer: How to count the number of multimapped reads from a bam file?
8 months ago by Shred ★ 1.0k
0
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0
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246
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Comment: Comment: Wildcards Snakemake using bedtools
9 months ago by Shred ★ 1.0k
1
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1
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953
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Comment: Comment: Running salmon in alignment mode?
9 months ago by Shred ★ 1.0k
0
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1
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523
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Comment: Comment: How to make predictions on genes not involved in a particular disease
9 months ago by Shred ★ 1.0k
0
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0
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487
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Comment: Comment: Which statistical test should be used for comparison of a single gene expression
10 months ago by Shred ★ 1.0k
0
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0
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613
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Answer: Answer: How to extract passed SNVs from a VCF file using bcftools?
10 months ago by Shred ★ 1.0k
0
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0
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463
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Comment: Comment: WGCNA functions not found
10 months ago by Shred ★ 1.0k
1
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1
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828
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Comment: Comment: For loop in R
10 months ago by Shred ★ 1.0k
0
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0
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515
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Comment: Comment: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
10 months ago by Shred ★ 1.0k
0
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1
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515
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Answer: Answer: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
10 months ago by Shred ★ 1.0k
2
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1
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814
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Answer: Answer: snakemake workflow
10 months ago by Shred ★ 1.0k
2
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0
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340
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Answer: Answer: Get GO terms for list of NCBI genes from Gene Ontology API using Python
10 months ago by Shred ★ 1.0k
0
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0
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723
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Comment: Comment: Best transcriptome assembler
11 months ago by Shred ★ 1.0k
1
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1
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723
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Answer: Answer: Best transcriptome assembler
11 months ago by Shred ★ 1.0k
0
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1
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723
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Comment: Comment: Best transcriptome assembler
11 months ago by Shred ★ 1.0k
1
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0
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1.6k
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Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
11 months ago by Shred ★ 1.0k
1
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1
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1.5k
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Comment: Comment: How to get specific information from a list of PDB ID and save all in a spreadsh
12 months ago by Shred ★ 1.0k
1
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1
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547
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Comment: Comment: lncRNA analysis
12 months ago by Shred ★ 1.0k
0
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0
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345
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Comment: Comment: why Mutect2 calls some germline variants as somatic ones?
12 months ago by Shred ★ 1.0k
0
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0
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408
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Comment: Comment: 3' mRNAseq Bioinformatic Considerations (bulk RNAseq)
12 months ago by Shred ★ 1.0k
1
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0
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540
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Answer: Answer: How to change gene coordinate in gtf file?
12 months ago by Shred ★ 1.0k
1
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0
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451
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Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
12 months ago by Shred ★ 1.0k
0
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0
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1.2k
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Comment: Comment: featureCounts parameters
12 months ago by Shred ★ 1.0k
0
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0
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1.2k
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Comment: Comment: featureCounts parameters
12 months ago by Shred ★ 1.0k
1
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0
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2.0k
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Comment: Comment: Install required dependencies for GATK4 on remote server without root privilege
12 months ago by Shred ★ 1.0k
0
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1
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1.2k
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Comment: Comment: featureCounts parameters
13 months ago by Shred ★ 1.0k
0
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2
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1.2k
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Comment: Comment: featureCounts parameters
13 months ago by Shred ★ 1.0k
0
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1
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969
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Comment: Comment: How can I bring similar columns from two different tables side by side?
13 months ago by Shred ★ 1.0k
0
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0
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1.1k
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Answer: Answer: Help with writing a loop for metaspades assembler (beginner)
13 months ago by Shred ★ 1.0k
1
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1
reply
2.5k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
13 months ago by Shred ★ 1.0k
1
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1
reply
2.5k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
13 months ago by Shred ★ 1.0k
1
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0
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2.5k
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Answer: Answer: Snakemake 'Unexpected keyword ref in rule definition'
13 months ago by Shred ★ 1.0k
0
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0
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777
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Answer: Answer: Converting A Long List of Ensembl IDs to Gene Symbols
13 months ago by Shred ★ 1.0k
1
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1
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366
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Answer: Answer: Extracting the mapped sequence of a certian gene
13 months ago by Shred ★ 1.0k
0
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0
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518
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Comment: Comment: Gene Enrichment
14 months ago by Shred ★ 1.0k
0
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0
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518
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Answer: Answer: Gene Enrichment
14 months ago by Shred ★ 1.0k
0
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0
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650
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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
14 months ago by Shred ★ 1.0k
0
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1
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650
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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
14 months ago by Shred ★ 1.0k
0
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1
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1.4k
views
Answer: Answer: Can't convert dog ensembl IDs into gene names
15 months ago by Shred ★ 1.0k
0
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0
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460
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Comment: Comment: How does gexpr function in ballgown package calculate the gene expression level
15 months ago by Shred ★ 1.0k
3
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5
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2.0k
views
Tool: Extend 3' UTR of a GTF file
RNA-Seq annotation GTF python Tool
updated 17 months ago by • 0 • written 2.5 years ago by ★ 1.0k
2
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0
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874
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Answer: Answer: How to extract all sequences mapped to a transcript from Kallisto output
18 months ago by Shred ★ 1.0k
0
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0
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661
views
Comment: Comment: Error when opening CEL files in python
18 months ago by Shred ★ 1.0k
0
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1
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637
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Comment: Comment: Cutoff value for shrunken logFC
18 months ago by Shred ★ 1.0k
0
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1
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702
views
Comment: Comment: Interpreting read coverage over gene body plot
18 months ago by Shred ★ 1.0k
0
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0
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801
views
Comment: Comment: Handle inflated log2FC while using interaction term in DESeq2
19 months ago by Shred ★ 1.0k
0
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3
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801
views
Handle inflated log2FC while using interaction term in DESeq2
RNAseq DESeq2 R
19 months ago by Shred ★ 1.0k
2
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0
replies
2.2k
views
Answer: Answer: From amino acid sequence to DNA sequence using Reverse Translate software
19 months ago by Shred ★ 1.0k
180 results • Page 2 of 4
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