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Comment: Comment: The conversion Ensembl ID into Gene symbol
7 months ago by Shred ★ 1.2k
0
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1
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332
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Comment: Comment: Benchmark data for variant calling assessment
7 months ago by Shred ★ 1.2k
1
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1
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999
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
7 months ago by Shred ★ 1.2k
0
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1
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999
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
7 months ago by Shred ★ 1.2k
1
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0
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367
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Comment: Comment: Running several rounds of the same rule in Snakemake
7 months ago by Shred ★ 1.2k
0
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1
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999
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Answer: Answer: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
7 months ago by Shred ★ 1.2k
1
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1
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354
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Comment: Comment: DEGseq - 3 conditions
7 months ago by Shred ★ 1.2k
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1
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354
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Comment: Comment: DEGseq - 3 conditions
7 months ago by Shred ★ 1.2k
0
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0
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412
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Comment: Comment: Htseq-count output file having a high number of __not_aligned
8 months ago by Shred ★ 1.2k
0
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1
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412
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Comment: Comment: Htseq-count output file having a high number of __not_aligned
8 months ago by Shred ★ 1.2k
2
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1
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899
views
Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
8 months ago by Shred ★ 1.2k
2
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0
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665
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Answer: Answer: Get both somatic and germline mutations from tumor only sample?
9 months ago by Shred ★ 1.2k
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1
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432
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Answer: Answer: Why a gene with amplification in copy number shows downregulation in transcripto
9 months ago by Shred ★ 1.2k
3
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1
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805
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Comment: Comment: Variant identified, What next?
9 months ago by Shred ★ 1.2k
2
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0
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405
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Answer: Answer: How to create a fasta file using a list of DNA sequences data
9 months ago by Shred ★ 1.2k
1
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1
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595
views
Comment: Comment: Reading in input file into a Snakemake pipeline
9 months ago by Shred ★ 1.2k
3
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1
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595
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Answer: Answer: Reading in input file into a Snakemake pipeline
9 months ago by Shred ★ 1.2k
0
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0
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884
views
Comment: Comment: Cannot call haplotypes on bam
9 months ago by Shred ★ 1.2k
2
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1
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494
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Comment: Comment: Feature selection for a binary classifier using mixed cancer type samples
9 months ago by Shred ★ 1.2k
0
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1
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884
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Comment: Comment: Cannot call haplotypes on bam
9 months ago by Shred ★ 1.2k
0
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1
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884
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Comment: Comment: Cannot call haplotypes on bam
9 months ago by Shred ★ 1.2k
1
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1
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668
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Comment: Comment: is there any pipeline or best practices of detecting germline neoantigen?
10 months ago by Shred ★ 1.2k
1
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2
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668
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Answer: Answer: is there any pipeline or best practices of detecting germline neoantigen?
10 months ago by Shred ★ 1.2k
0
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1
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660
views
Comment: Comment: Increased GC content after trimming RNAseq data
10 months ago by Shred ★ 1.2k
3
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0
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542
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Answer: Answer: Figuring out if a gene exists in a genome
10 months ago by Shred ★ 1.2k
2
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1
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521
views
Answer: Answer: Python pandas transforming int to float in gff subsetting
10 months ago by Shred ★ 1.2k
0
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0
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678
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Answer: Answer: How to count the number of multimapped reads from a bam file?
11 months ago by Shred ★ 1.2k
0
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0
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272
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Comment: Comment: Wildcards Snakemake using bedtools
11 months ago by Shred ★ 1.2k
1
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1
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1.0k
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Comment: Comment: Running salmon in alignment mode?
11 months ago by Shred ★ 1.2k
0
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1
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550
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Comment: Comment: How to make predictions on genes not involved in a particular disease
11 months ago by Shred ★ 1.2k
0
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0
replies
525
views
Comment: Comment: Which statistical test should be used for comparison of a single gene expression
12 months ago by Shred ★ 1.2k
0
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0
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713
views
Answer: Answer: How to extract passed SNVs from a VCF file using bcftools?
12 months ago by Shred ★ 1.2k
0
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0
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531
views
Comment: Comment: WGCNA functions not found
12 months ago by Shred ★ 1.2k
1
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1
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932
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Comment: Comment: For loop in R
12 months ago by Shred ★ 1.2k
0
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0
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576
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Comment: Comment: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
12 months ago by Shred ★ 1.2k
0
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1
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576
views
Answer: Answer: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
12 months ago by Shred ★ 1.2k
2
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1
reply
940
views
Answer: Answer: snakemake workflow
12 months ago by Shred ★ 1.2k
2
votes
0
replies
390
views
Answer: Answer: Get GO terms for list of NCBI genes from Gene Ontology API using Python
13 months ago by Shred ★ 1.2k
0
votes
0
replies
817
views
Comment: Comment: Best transcriptome assembler
13 months ago by Shred ★ 1.2k
1
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1
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817
views
Answer: Answer: Best transcriptome assembler
13 months ago by Shred ★ 1.2k
0
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1
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817
views
Comment: Comment: Best transcriptome assembler
13 months ago by Shred ★ 1.2k
1
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0
replies
1.9k
views
Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
14 months ago by Shred ★ 1.2k
1
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1
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1.7k
views
Comment: Comment: How to get specific information from a list of PDB ID and save all in a spreadsh
14 months ago by Shred ★ 1.2k
1
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1
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595
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Comment: Comment: lncRNA analysis
14 months ago by Shred ★ 1.2k
0
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0
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376
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Comment: Comment: why Mutect2 calls some germline variants as somatic ones?
15 months ago by Shred ★ 1.2k
0
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0
replies
434
views
Comment: Comment: 3' mRNAseq Bioinformatic Considerations (bulk RNAseq)
15 months ago by Shred ★ 1.2k
1
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0
replies
604
views
Answer: Answer: How to change gene coordinate in gtf file?
15 months ago by Shred ★ 1.2k
1
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0
replies
486
views
Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
15 months ago by Shred ★ 1.2k
0
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0
replies
1.3k
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Comment: Comment: featureCounts parameters
15 months ago by Shred ★ 1.2k
0
votes
0
replies
1.3k
views
Comment: Comment: featureCounts parameters
15 months ago by Shred ★ 1.2k
204 results • Page 2 of 5
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