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Comment: Comment: is there any pipeline or best practices of detecting germline neoantigen?
10 months ago by Shred ★ 1.2k
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1
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660
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Comment: Comment: Increased GC content after trimming RNAseq data
10 months ago by Shred ★ 1.2k
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0
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272
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Comment: Comment: Wildcards Snakemake using bedtools
11 months ago by Shred ★ 1.2k
1
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1
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1.0k
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Comment: Comment: Running salmon in alignment mode?
11 months ago by Shred ★ 1.2k
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1
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550
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Comment: Comment: How to make predictions on genes not involved in a particular disease
11 months ago by Shred ★ 1.2k
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0
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525
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Comment: Comment: Which statistical test should be used for comparison of a single gene expression
12 months ago by Shred ★ 1.2k
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0
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531
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Comment: Comment: WGCNA functions not found
12 months ago by Shred ★ 1.2k
1
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1
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932
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Comment: Comment: For loop in R
12 months ago by Shred ★ 1.2k
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0
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576
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Comment: Comment: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
12 months ago by Shred ★ 1.2k
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0
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817
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Comment: Comment: Best transcriptome assembler
13 months ago by Shred ★ 1.2k
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1
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817
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Comment: Comment: Best transcriptome assembler
13 months ago by Shred ★ 1.2k
1
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0
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1.9k
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Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
14 months ago by Shred ★ 1.2k
1
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1
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1.7k
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Comment: Comment: How to get specific information from a list of PDB ID and save all in a spreadsh
14 months ago by Shred ★ 1.2k
1
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1
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595
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Comment: Comment: lncRNA analysis
14 months ago by Shred ★ 1.2k
0
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0
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376
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Comment: Comment: why Mutect2 calls some germline variants as somatic ones?
15 months ago by Shred ★ 1.2k
0
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0
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434
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Comment: Comment: 3' mRNAseq Bioinformatic Considerations (bulk RNAseq)
15 months ago by Shred ★ 1.2k
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0
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1.3k
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Comment: Comment: featureCounts parameters
15 months ago by Shred ★ 1.2k
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0
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1.3k
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Comment: Comment: featureCounts parameters
15 months ago by Shred ★ 1.2k
1
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0
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2.3k
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Comment: Comment: Install required dependencies for GATK4 on remote server without root privilege
15 months ago by Shred ★ 1.2k
0
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1
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1.3k
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Comment: Comment: featureCounts parameters
15 months ago by Shred ★ 1.2k
0
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2
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1.3k
views
Comment: Comment: featureCounts parameters
15 months ago by Shred ★ 1.2k
0
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1
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1.0k
views
Comment: Comment: How can I bring similar columns from two different tables side by side?
15 months ago by Shred ★ 1.2k
1
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1
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2.9k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
15 months ago by Shred ★ 1.2k
1
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1
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2.9k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
15 months ago by Shred ★ 1.2k
0
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0
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573
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Comment: Comment: Gene Enrichment
16 months ago by Shred ★ 1.2k
0
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0
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681
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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
16 months ago by Shred ★ 1.2k
0
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1
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681
views
Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
16 months ago by Shred ★ 1.2k
0
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0
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496
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Comment: Comment: How does gexpr function in ballgown package calculate the gene expression level
17 months ago by Shred ★ 1.2k
0
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0
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747
views
Comment: Comment: Error when opening CEL files in python
20 months ago by Shred ★ 1.2k
0
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1
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689
views
Comment: Comment: Cutoff value for shrunken logFC
20 months ago by Shred ★ 1.2k
0
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1
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760
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Comment: Comment: Interpreting read coverage over gene body plot
21 months ago by Shred ★ 1.2k
0
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0
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856
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Comment: Comment: Handle inflated log2FC while using interaction term in DESeq2
21 months ago by Shred ★ 1.2k
1
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0
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2.8k
views
Comment: Comment: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
22 months ago by Shred ★ 1.2k
1
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0
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899
views
Comment: Comment: Single-End to reduce cost for Differential Expression Analysis ?
22 months ago by Shred ★ 1.2k
0
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1
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680
views
Comment: Comment: CPM and FPKM for machine learning
23 months ago by Shred ★ 1.2k
0
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0
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1.6k
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Comment: Comment: Convert MSTRG gene IDs to real one?
23 months ago by Shred ★ 1.2k
1
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2
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877
views
Comment: Comment: How to grep every row for the every value of a column?
2.2 years ago by Shred ★ 1.2k
1
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0
replies
487
views
Comment: C: module vs miniconda in HPC
2.2 years ago by Shred ★ 1.2k
3
votes
1
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1.1k
views
Comment: C: How to install R in WinSCP server
2.3 years ago by Shred ★ 1.2k
1
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0
replies
1.9k
views
Comment: C: Pseudogenes in the human genome annotation
2.5 years ago by Shred ★ 1.2k
0
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0
replies
955
views
Comment: C: Find read distribution over every gene in RNA-seq
2.6 years ago by Shred ★ 1.2k
0
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1
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955
views
Comment: C: Find read distribution over every gene in RNA-seq
2.6 years ago by Shred ★ 1.2k
0
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1
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1.8k
views
Comment: C: How to get the output on multiple files into one file in sbatch script?
2.6 years ago by Shred ★ 1.2k
0
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1
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1.2k
views
Comment: C: Difference in the counts generated using FeatureCounts and HTseq
2.6 years ago by Shred ★ 1.2k
0
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0
replies
1.2k
views
Comment: C: How to remove fasta headers in a multifasta file and write file name as a fasta
2.6 years ago by Shred ★ 1.2k
0
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1
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2.1k
views
Comment: C: Extend 3' UTR of a GTF file
2.7 years ago by Shred ★ 1.2k
1
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0
replies
1.0k
views
Comment: C: How to retrieve sequences of genes list at a time from a fasta file
2.7 years ago by Shred ★ 1.2k
0
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0
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882
views
Comment: C: Tips for Reading genotype files into python
2.7 years ago by Shred ★ 1.2k
0
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0
replies
882
views
Comment: C: Tips for Reading genotype files into python
2.7 years ago by Shred ★ 1.2k
0
votes
1
reply
882
views
Comment: C: Tips for Reading genotype files into python
2.7 years ago by Shred ★ 1.2k
132 results • Page 2 of 3
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