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3
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1.2k
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Comment:
Comment: Variant identified, What next?
19 months ago by
Shred
★ 1.4k
2
votes
0
replies
700
views
Answer:
Answer: How to create a fasta file using a list of DNA sequences data
19 months ago by
Shred
★ 1.4k
1
vote
1
reply
912
views
Comment:
Comment: Reading in input file into a Snakemake pipeline
19 months ago by
Shred
★ 1.4k
3
votes
1
reply
912
views
Answer:
Answer: Reading in input file into a Snakemake pipeline
19 months ago by
Shred
★ 1.4k
0
votes
0
replies
1.2k
views
Comment:
Comment: Cannot call haplotypes on bam
20 months ago by
Shred
★ 1.4k
2
votes
1
reply
698
views
Comment:
Comment: Feature selection for a binary classifier using mixed cancer type samples
20 months ago by
Shred
★ 1.4k
0
votes
1
reply
1.2k
views
Comment:
Comment: Cannot call haplotypes on bam
20 months ago by
Shred
★ 1.4k
0
votes
1
reply
1.2k
views
Comment:
Comment: Cannot call haplotypes on bam
20 months ago by
Shred
★ 1.4k
1
vote
1
reply
911
views
Comment:
Comment: is there any pipeline or best practices of detecting germline neoantigen?
20 months ago by
Shred
★ 1.4k
1
vote
2
replies
911
views
Answer:
Answer: is there any pipeline or best practices of detecting germline neoantigen?
20 months ago by
Shred
★ 1.4k
0
votes
1
reply
968
views
Comment:
Comment: Increased GC content after trimming RNAseq data
20 months ago by
Shred
★ 1.4k
3
votes
0
replies
746
views
Answer:
Answer: Figuring out if a gene exists in a genome
20 months ago by
Shred
★ 1.4k
2
votes
1
reply
778
views
Answer:
Answer: Python pandas transforming int to float in gff subsetting
20 months ago by
Shred
★ 1.4k
0
votes
0
replies
1.0k
views
Answer:
Answer: How to count the number of multimapped reads from a bam file?
21 months ago by
Shred
★ 1.4k
0
votes
0
replies
442
views
Comment:
Comment: Wildcards Snakemake using bedtools
21 months ago by
Shred
★ 1.4k
1
vote
1
reply
1.4k
views
Comment:
Comment: Running salmon in alignment mode?
22 months ago by
Shred
★ 1.4k
0
votes
1
reply
715
views
Comment:
Comment: How to make predictions on genes not involved in a particular disease
22 months ago by
Shred
★ 1.4k
0
votes
0
replies
714
views
Comment:
Comment: Which statistical test should be used for comparison of a single gene expression
22 months ago by
Shred
★ 1.4k
0
votes
0
replies
1.2k
views
Answer:
Answer: How to extract passed SNVs from a VCF file using bcftools?
22 months ago by
Shred
★ 1.4k
0
votes
0
replies
740
views
Comment:
Comment: WGCNA functions not found
22 months ago by
Shred
★ 1.4k
1
vote
1
reply
1.4k
views
Comment:
Comment: For loop in R
22 months ago by
Shred
★ 1.4k
0
votes
0
replies
811
views
Comment:
Comment: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
22 months ago by
Shred
★ 1.4k
0
votes
1
reply
811
views
Answer:
Answer: Some questions about 3'UTR regions from rat 6.0 fasta and gtf files
22 months ago by
Shred
★ 1.4k
2
votes
1
reply
1.5k
views
Answer:
Answer: snakemake workflow
22 months ago by
Shred
★ 1.4k
2
votes
0
replies
620
views
Answer:
Answer: Get GO terms for list of NCBI genes from Gene Ontology API using Python
23 months ago by
Shred
★ 1.4k
0
votes
0
replies
1.2k
views
Comment:
Comment: Best transcriptome assembler
24 months ago by
Shred
★ 1.4k
1
vote
1
reply
1.2k
views
Answer:
Answer: Best transcriptome assembler
24 months ago by
Shred
★ 1.4k
0
votes
1
reply
1.2k
views
Comment:
Comment: Best transcriptome assembler
24 months ago by
Shred
★ 1.4k
1
vote
0
replies
2.9k
views
Comment:
Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
24 months ago by
Shred
★ 1.4k
1
vote
1
reply
2.4k
views
Comment:
Comment: How to get specific information from a list of PDB ID and save all in a spreadsh
2.0 years ago by
Shred
★ 1.4k
1
vote
1
reply
816
views
Comment:
Comment: lncRNA analysis
2.0 years ago by
Shred
★ 1.4k
0
votes
0
replies
538
views
Comment:
Comment: why Mutect2 calls some germline variants as somatic ones?
2.1 years ago by
Shred
★ 1.4k
0
votes
0
replies
648
views
Comment:
Comment: 3' mRNAseq Bioinformatic Considerations (bulk RNAseq)
2.1 years ago by
Shred
★ 1.4k
1
vote
0
replies
875
views
Answer:
Answer: How to change gene coordinate in gtf file?
2.1 years ago by
Shred
★ 1.4k
1
vote
0
replies
681
views
Answer:
Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
2.1 years ago by
Shred
★ 1.4k
0
votes
0
replies
1.9k
views
Comment:
Comment: featureCounts parameters
2.1 years ago by
Shred
★ 1.4k
0
votes
0
replies
1.9k
views
Comment:
Comment: featureCounts parameters
2.1 years ago by
Shred
★ 1.4k
1
vote
0
replies
3.6k
views
Comment:
Comment: Install required dependencies for GATK4 on remote server without root privilege
2.1 years ago by
Shred
★ 1.4k
0
votes
1
reply
1.9k
views
Comment:
Comment: featureCounts parameters
2.1 years ago by
Shred
★ 1.4k
0
votes
2
replies
1.9k
views
Comment:
Comment: featureCounts parameters
2.1 years ago by
Shred
★ 1.4k
0
votes
1
reply
1.3k
views
Comment:
Comment: How can I bring similar columns from two different tables side by side?
2.1 years ago by
Shred
★ 1.4k
0
votes
0
replies
1.7k
views
Answer:
Answer: Help with writing a loop for metaspades assembler (beginner)
2.1 years ago by
Shred
★ 1.4k
1
vote
1
reply
4.1k
views
Comment:
Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.1 years ago by
Shred
★ 1.4k
1
vote
1
reply
4.1k
views
Comment:
Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.1 years ago by
Shred
★ 1.4k
1
vote
0
replies
4.1k
views
Answer:
Answer: Snakemake 'Unexpected keyword ref in rule definition'
2.1 years ago by
Shred
★ 1.4k
0
votes
0
replies
1.5k
views
Answer:
Answer: Converting A Long List of Ensembl IDs to Gene Symbols
2.1 years ago by
Shred
★ 1.4k
1
vote
1
reply
542
views
Answer:
Answer: Extracting the mapped sequence of a certian gene
2.2 years ago by
Shred
★ 1.4k
0
votes
0
replies
865
views
Comment:
Comment: Gene Enrichment
2.2 years ago by
Shred
★ 1.4k
0
votes
0
replies
865
views
Answer:
Answer: Gene Enrichment
2.2 years ago by
Shred
★ 1.4k
0
votes
0
replies
928
views
Comment:
Comment: Which file types are needed to represent the genotype in a phenotype - genotype
2.2 years ago by
Shred
★ 1.4k
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