User: gladnovin

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Posts by gladnovin

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t-test for microarray analysis in R
... HI, I have a code , I dont know if the code exactly falls for paired t test or not? logX.cl <- c(0, 0, 1,1) ttest = function(x) { tt = t.test(x[logX.cl == 0], x[logX.cl == 1]) return(c(tt$statistic, tt$p.value)) } ...
R written 6 months ago by gladnovin0 • updated 6 months ago by Biostar ♦♦ 20
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Comment: C: Gene expression analysis
... Hi , I had started working on Microarray analysis using GEO dataset(I used GSE541547). I found the differential expressed genes, using Heatmaps . The ML algorithm used in heatmaps is Hierarchial clustering. I want use another ML algorithm eg SOM , or some other algorithms which could predict differe ...
written 6 months ago by gladnovin0
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Gene expression analysis
... Hi, I started to work with GEO datasets on Hodgkin Lymphoma(R programming) . I found all the differential expressed genes . But i would like to use another ML algorithm for better understanding. Or is it possible to show survival analysis for the same dataset?? Or any other ideas to work with thi ...
R cancer written 6 months ago by gladnovin0

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