Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
1
vote
2
replies
983
views
3 questions about module membership vs gene significance
WGCNA
updated 13 months ago by ★ 29k • written 3.8 years ago by ▴ 110
19
votes
9
replies
15k
views
9 follow
correct way of analyzing cell proportions in singlecell data
scRNA-seq single-cell
updated 15 months ago by 45k • written 4.6 years ago by ▴ 110
0
votes
2
replies
860
views
featurecounts not working on mirbase annotation file
usegalaxy miRNA-seq
22 months ago by demoraesdiogo2017 ▴ 110
1
vote
2
replies
782
views
No counts in my RNA-seq data
sRNA e.coli
2.1 years ago by demoraesdiogo2017 ▴ 110
3
votes
2
replies
792
views
carp reads in my bacterial small RNome
rna-seq
updated 2.1 years ago by 7.3k • written 2.1 years ago by ▴ 110
3
votes
3
replies
1.1k
views
mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase mirna-seq
2.2 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
527
views
maximum fastq file size in galaxy?
fastq rna-seq usegalaxy
2.2 years ago by demoraesdiogo2017 ▴ 110
1
vote
5
replies
1.2k
views
more than one sample in the same fasta file
mirnaseq usegalaxy
2.2 years ago by demoraesdiogo2017 ▴ 110
3
votes
2
replies
1.3k
views
Relative log expression normalization without negative values
rna-seq
updated 2.6 years ago by 87k • written 2.6 years ago by ▴ 110
2
votes
3
replies
2.2k
views
96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq single-cell
updated 2.7 years ago by 87k • written 2.7 years ago by ▴ 110
0
votes
3
replies
939
views
0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x BCLconvert illumina snrnaseq
updated 2.7 years ago by 150k • written 2.7 years ago by ▴ 110
4
votes
5
replies
2.5k
views
how to tell if data was log transformed
UPLC
updated 3.1 years ago by ★ 29k • written 3.1 years ago by ▴ 110
0
votes
0
replies
443
views
cytoescape enhancedgraphics image export bug
cytoescape enhancedgraphics
3.2 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
810
views
high resolution deconvolution problem
cibersort deconvolution rna-seq
3.8 years ago by demoraesdiogo2017 ▴ 110
2
votes
4
replies
1.1k
views
whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
3.8 years ago by demoraesdiogo2017 ▴ 110
2
votes
2
replies
1.4k
views
WGCNA module network interpretation
network WGCNA
3.8 years ago by demoraesdiogo2017 ▴ 110
5
votes
9
replies
12k
views
6 follow
ANOVA for RNA-seq data?
anova RNA-Seq
updated 3.6 years ago by 9.0k • written 5.3 years ago by ▴ 110
1
vote
1
reply
973
views
gene expression x phenotype correlation
RNA-Seq
updated 4.0 years ago by ★ 7.8k • written 4.1 years ago by ▴ 110
1
vote
3
replies
928
views
two samples with 0% alignment
galaxy hisat2 RNA-Seq
4.1 years ago by demoraesdiogo2017 ▴ 110
2
votes
5
replies
790
views
anyway to save contaminated samples?
RNA-Seq
4.1 years ago by demoraesdiogo2017 ▴ 110
2
votes
2
replies
924
views
blasting unaligned reads on usegalaxy
usegalaxy RNA-Seq hisat2
4.2 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
609
views
over represented adapter in reverse but not in forward reads?
RNA-Seq
4.2 years ago by demoraesdiogo2017 ▴ 110
0
votes
1
reply
637
views
clusters with no enrichment?
RNA-Seq
4.2 years ago by demoraesdiogo2017 ▴ 110
0
votes
1
reply
1.0k
views
Seurat merge differing number of rows
seurat
updated 4.3 years ago by 20 • written 4.3 years ago by ▴ 110
1
vote
6
replies
9.5k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
4.6 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
631
views
comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
4.8 years ago by demoraesdiogo2017 ▴ 110
1
vote
1
reply
1.4k
views
GEO COVID-19 accession with no .mtx, .crb or .rds file?
scmRNA single cell covid-19
4.8 years ago by demoraesdiogo2017 ▴ 110
0
votes
0
replies
727
views
two questions about drugbank and proposing an update on a pathway
drugbank kegg pathway
updated 4.9 years ago by 45k • written 4.9 years ago by ▴ 110
0
votes
4
replies
851
views
selecting a transcript for in vivo validation
RNA-Seq gene
5.2 years ago by demoraesdiogo2017 ▴ 110
8
votes
12
replies
2.2k
views
correlating focal CNV values with RNA-seq expression
CNV RNA-seq
updated 5.4 years ago by ★ 18k • written 5.4 years ago by ▴ 110
1
vote
1
reply
1.1k
views
RNAseq differential expression analysis with only a set of genes
gene set differential expression
updated 5.6 years ago by 87k • written 5.6 years ago by ▴ 110
7
votes
10
replies
2.3k
views
col as names [solved]
R
updated 2.0 years ago by 45k • written 6.0 years ago by ▴ 110
3
votes
2
replies
4.2k
views
TPM and TMM, which should I use for clustering?
tpm tmm clustering
updated 6.1 years ago by 8.3k • written 6.1 years ago by ▴ 110
0
votes
1
reply
2.0k
views
TMM to TPM conversion
TMM TPM
6.1 years ago by demoraesdiogo2017 ▴ 110
2
votes
7
replies
5.2k
views
does the multiple linear regression from glmnet generate a formula?
ridge multiple linear regression lasso glmnet
6.1 years ago by demoraesdiogo2017 ▴ 110
2
votes
1
reply
1.1k
views
are my results what they are supposed to look like?
lasso linear regression glmnet
6.1 years ago by demoraesdiogo2017 ▴ 110
7
votes
7
replies
13k
views
giving a color to null values on heatmap2
heatmap null values nas
updated 6.5 years ago by 15k • written 6.5 years ago by ▴ 110
0
votes
3
replies
8.5k
views
adding PCA ellipses on ggplot2
gene RNA-Seq ggplot2 pca
6.5 years ago by demoraesdiogo2017 ▴ 110
0
votes
2
replies
3.2k
views
"methods.rdb' is corrupt" for every library I load
software error R
updated 6.8 years ago by 89k • written 6.8 years ago by ▴ 110
5
votes
4
replies
17k
views
glmnet package lasso error
glmnet lasso multilinear regression
7.1 years ago by demoraesdiogo2017 ▴ 110
40 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6