Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
1
vote
2
replies
275
views
No counts in my RNA-seq data
sRNA e.coli
3 months ago by demoraesdiogo2017 ▴ 90
3
votes
2
replies
328
views
carp reads in my bacterial small RNome
rna-seq
updated 3 months ago by 4.8k • written 3 months ago by ▴ 90
3
votes
3
replies
433
views
mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase mirna-seq
3 months ago by demoraesdiogo2017 ▴ 90
0
votes
0
replies
211
views
maximum fastq file size in galaxy?
fastq rna-seq usegalaxy
3 months ago by demoraesdiogo2017 ▴ 90
1
vote
5
replies
406
views
more than one sample in the same fasta file
mirnaseq usegalaxy
4 months ago by demoraesdiogo2017 ▴ 90
3
votes
2
replies
469
views
Relative log expression normalization without negative values
rna-seq
updated 9 months ago by 72k • written 9 months ago by ▴ 90
2
votes
3
replies
892
views
96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq single-cell
updated 10 months ago by 72k • written 10 months ago by ▴ 90
0
votes
3
replies
427
views
0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x BCLconvert illumina snrnaseq
updated 10 months ago by 129k • written 10 months ago by ▴ 90
1
vote
5
replies
830
views
how to tell if data was log transformed
UPLC
updated 16 months ago by ★ 23k • written 16 months ago by ▴ 90
0
votes
0
replies
211
views
cytoescape enhancedgraphics image export bug
cytoescape enhancedgraphics
16 months ago by demoraesdiogo2017 ▴ 90
0
votes
0
replies
373
views
3 questions about module membership vs gene significance
WGCNA
23 months ago by demoraesdiogo2017 ▴ 90
0
votes
0
replies
434
views
high resolution deconvolution problem
cibersort deconvolution rna-seq
24 months ago by demoraesdiogo2017 ▴ 90
2
votes
4
replies
594
views
whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
24 months ago by demoraesdiogo2017 ▴ 90
2
votes
2
replies
779
views
WGCNA module network interpretation
network WGCNA
24 months ago by demoraesdiogo2017 ▴ 90
5
votes
9
replies
7.1k
views
6 follow
ANOVA for RNA-seq data?
anova RNA-Seq
updated 20 months ago by 8.4k • written 3.5 years ago by ▴ 90
14
votes
8
replies
7.3k
views
8 follow
correct way of analyzing cell proportions in singlecell data
single-cell RNaseq
updated 15 months ago by • 0 • written 2.8 years ago by ▴ 90
1
vote
1
reply
585
views
gene expression x phenotype correlation
RNA-Seq
updated 2.2 years ago by ★ 6.1k • written 2.2 years ago by ▴ 90
1
vote
3
replies
523
views
two samples with 0% alignment
galaxy hisat2 RNA-Seq
2.3 years ago by demoraesdiogo2017 ▴ 90
2
votes
5
replies
427
views
anyway to save contaminated samples?
RNA-Seq
2.3 years ago by demoraesdiogo2017 ▴ 90
2
votes
2
replies
549
views
blasting unaligned reads on usegalaxy
usegalaxy RNA-Seq hisat2
2.3 years ago by demoraesdiogo2017 ▴ 90
0
votes
0
replies
412
views
over represented adapter in reverse but not in forward reads?
RNA-Seq
2.3 years ago by demoraesdiogo2017 ▴ 90
0
votes
1
reply
378
views
clusters with no enrichment?
RNA-Seq
2.4 years ago by demoraesdiogo2017 ▴ 90
0
votes
1
reply
574
views
Seurat merge differing number of rows
seurat
updated 2.4 years ago by 20 • written 2.4 years ago by ▴ 90
1
vote
6
replies
4.0k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
2.8 years ago by demoraesdiogo2017 ▴ 90
0
votes
0
replies
452
views
comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
2.9 years ago by demoraesdiogo2017 ▴ 90
1
vote
1
reply
1.0k
views
GEO COVID-19 accession with no .mtx, .crb or .rds file?
scmRNA single cell covid-19
3.0 years ago by demoraesdiogo2017 ▴ 90
0
votes
0
replies
484
views
two questions about drugbank and proposing an update on a pathway
drugbank kegg pathway
updated 3.1 years ago by 39k • written 3.1 years ago by ▴ 90
0
votes
4
replies
548
views
selecting a transcript for in vivo validation
RNA-Seq gene
3.3 years ago by demoraesdiogo2017 ▴ 90
8
votes
12
replies
1.2k
views
correlating focal CNV values with RNA-seq expression
CNV RNA-seq
updated 3.5 years ago by ★ 14k • written 3.5 years ago by ▴ 90
1
vote
1
reply
797
views
RNAseq differential expression analysis with only a set of genes
gene set differential expression
updated 3.8 years ago by 72k • written 3.8 years ago by ▴ 90
7
votes
10
replies
1.2k
views
col as names [solved]
R
updated 10 weeks ago by 39k • written 4.2 years ago by ▴ 90
3
votes
2
replies
3.2k
views
TPM and TMM, which should I use for clustering?
tpm tmm clustering
updated 4.2 years ago by 8.2k • written 4.2 years ago by ▴ 90
0
votes
1
reply
1.6k
views
TMM to TPM conversion
TMM TPM
4.2 years ago by demoraesdiogo2017 ▴ 90
2
votes
7
replies
4.0k
views
does the multiple linear regression from glmnet generate a formula?
ridge multiple linear regression lasso glmnet
4.3 years ago by demoraesdiogo2017 ▴ 90
2
votes
1
reply
778
views
are my results what they are supposed to look like?
lasso linear regression glmnet
4.3 years ago by demoraesdiogo2017 ▴ 90
7
votes
7
replies
10k
views
giving a color to null values on heatmap2
heatmap null values nas
updated 4.7 years ago by 14k • written 4.7 years ago by ▴ 90
0
votes
3
replies
7.7k
views
adding PCA ellipses on ggplot2
gene RNA-Seq ggplot2 pca
4.7 years ago by demoraesdiogo2017 ▴ 90
0
votes
2
replies
2.7k
views
"methods.rdb' is corrupt" for every library I load
software error R
updated 4.9 years ago by 85k • written 4.9 years ago by ▴ 90
5
votes
4
replies
14k
views
glmnet package lasso error
glmnet lasso multilinear regression
5.2 years ago by demoraesdiogo2017 ▴ 90
39 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6