Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
1
vote
2
replies
734
views
3 questions about module membership vs gene significance
WGCNA
updated 8 weeks ago by ★ 27k • written 2.8 years ago by ▴ 100
17
votes
9
replies
11k
views
9 follow
correct way of analyzing cell proportions in singlecell data
scRNA-seq single-cell
updated 3 months ago by 43k • written 3.7 years ago by ▴ 100
0
votes
2
replies
588
views
featurecounts not working on mirbase annotation file
usegalaxy miRNA-seq
10 months ago by demoraesdiogo2017 ▴ 100
1
vote
2
replies
507
views
No counts in my RNA-seq data
sRNA e.coli
14 months ago by demoraesdiogo2017 ▴ 100
3
votes
2
replies
572
views
carp reads in my bacterial small RNome
rna-seq
updated 14 months ago by 6.3k • written 14 months ago by ▴ 100
3
votes
3
replies
744
views
mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase mirna-seq
14 months ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
372
views
maximum fastq file size in galaxy?
fastq rna-seq usegalaxy
14 months ago by demoraesdiogo2017 ▴ 100
1
vote
5
replies
765
views
more than one sample in the same fasta file
mirnaseq usegalaxy
15 months ago by demoraesdiogo2017 ▴ 100
3
votes
2
replies
904
views
Relative log expression normalization without negative values
rna-seq
updated 20 months ago by 81k • written 20 months ago by ▴ 100
2
votes
3
replies
1.5k
views
96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq single-cell
updated 21 months ago by 81k • written 21 months ago by ▴ 100
0
votes
3
replies
708
views
0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x BCLconvert illumina snrnaseq
updated 21 months ago by 141k • written 21 months ago by ▴ 100
4
votes
5
replies
1.6k
views
how to tell if data was log transformed
UPLC
updated 2.2 years ago by ★ 27k • written 2.2 years ago by ▴ 100
0
votes
0
replies
330
views
cytoescape enhancedgraphics image export bug
cytoescape enhancedgraphics
2.2 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
630
views
high resolution deconvolution problem
cibersort deconvolution rna-seq
2.9 years ago by demoraesdiogo2017 ▴ 100
2
votes
4
replies
811
views
whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
2.9 years ago by demoraesdiogo2017 ▴ 100
2
votes
2
replies
1.1k
views
WGCNA module network interpretation
network WGCNA
2.9 years ago by demoraesdiogo2017 ▴ 100
5
votes
9
replies
9.4k
views
6 follow
ANOVA for RNA-seq data?
anova RNA-Seq
updated 2.6 years ago by 8.6k • written 4.4 years ago by ▴ 100
1
vote
1
reply
766
views
gene expression x phenotype correlation
RNA-Seq
updated 3.1 years ago by ★ 7.0k • written 3.1 years ago by ▴ 100
1
vote
3
replies
718
views
two samples with 0% alignment
galaxy hisat2 RNA-Seq
3.2 years ago by demoraesdiogo2017 ▴ 100
2
votes
5
replies
603
views
anyway to save contaminated samples?
RNA-Seq
3.2 years ago by demoraesdiogo2017 ▴ 100
2
votes
2
replies
698
views
blasting unaligned reads on usegalaxy
usegalaxy RNA-Seq hisat2
3.2 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
519
views
over represented adapter in reverse but not in forward reads?
RNA-Seq
3.2 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
491
views
clusters with no enrichment?
RNA-Seq
3.3 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
798
views
Seurat merge differing number of rows
seurat
updated 3.3 years ago by 20 • written 3.3 years ago by ▴ 100
1
vote
6
replies
6.6k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
3.7 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
540
views
comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
3.8 years ago by demoraesdiogo2017 ▴ 100
1
vote
1
reply
1.2k
views
GEO COVID-19 accession with no .mtx, .crb or .rds file?
scmRNA single cell covid-19
3.9 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
589
views
two questions about drugbank and proposing an update on a pathway
drugbank kegg pathway
updated 4.0 years ago by 43k • written 4.0 years ago by ▴ 100
0
votes
4
replies
688
views
selecting a transcript for in vivo validation
RNA-Seq gene
4.2 years ago by demoraesdiogo2017 ▴ 100
8
votes
12
replies
1.6k
views
correlating focal CNV values with RNA-seq expression
CNV RNA-seq
updated 4.4 years ago by ★ 16k • written 4.4 years ago by ▴ 100
1
vote
1
reply
920
views
RNAseq differential expression analysis with only a set of genes
gene set differential expression
updated 4.7 years ago by 81k • written 4.7 years ago by ▴ 100
7
votes
10
replies
1.7k
views
col as names [solved]
R
updated 13 months ago by 43k • written 5.1 years ago by ▴ 100
3
votes
2
replies
3.8k
views
TPM and TMM, which should I use for clustering?
tpm tmm clustering
updated 5.1 years ago by 8.2k • written 5.1 years ago by ▴ 100
0
votes
1
reply
1.8k
views
TMM to TPM conversion
TMM TPM
5.1 years ago by demoraesdiogo2017 ▴ 100
2
votes
7
replies
4.6k
views
does the multiple linear regression from glmnet generate a formula?
ridge multiple linear regression lasso glmnet
5.2 years ago by demoraesdiogo2017 ▴ 100
2
votes
1
reply
910
views
are my results what they are supposed to look like?
lasso linear regression glmnet
5.2 years ago by demoraesdiogo2017 ▴ 100
7
votes
7
replies
11k
views
giving a color to null values on heatmap2
heatmap null values nas
updated 5.6 years ago by 14k • written 5.6 years ago by ▴ 100
0
votes
3
replies
8.2k
views
adding PCA ellipses on ggplot2
gene RNA-Seq ggplot2 pca
5.6 years ago by demoraesdiogo2017 ▴ 100
0
votes
2
replies
3.0k
views
"methods.rdb' is corrupt" for every library I load
software error R
updated 5.8 years ago by 87k • written 5.8 years ago by ▴ 100
5
votes
4
replies
16k
views
glmnet package lasso error
glmnet lasso multilinear regression
6.1 years ago by demoraesdiogo2017 ▴ 100
40 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6