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0
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394
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Comment: Comment: featurecounts not working on mirbase annotation file
3 months ago by demoraesdiogo2017 ▴ 90
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2
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394
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featurecounts not working on mirbase annotation file
usegalaxy miRNA-seq
3 months ago by demoraesdiogo2017 ▴ 90
0
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0
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353
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Comment: Comment: No counts in my RNA-seq data
7 months ago by demoraesdiogo2017 ▴ 90
1
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2
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353
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No counts in my RNA-seq data
sRNA e.coli
7 months ago by demoraesdiogo2017 ▴ 90
3
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2
replies
408
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carp reads in my bacterial small RNome
rna-seq
updated 7 months ago by 5.5k • written 7 months ago by ▴ 90
0
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0
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555
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Comment: Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
8 months ago by demoraesdiogo2017 ▴ 90
3
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3
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555
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mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase mirna-seq
8 months ago by demoraesdiogo2017 ▴ 90
0
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0
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268
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maximum fastq file size in galaxy?
fastq rna-seq usegalaxy
8 months ago by demoraesdiogo2017 ▴ 90
0
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0
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553
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Comment: Comment: more than one sample in the same fasta file
8 months ago by demoraesdiogo2017 ▴ 90
0
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1
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553
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Comment: Comment: more than one sample in the same fasta file
8 months ago by demoraesdiogo2017 ▴ 90
1
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5
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553
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more than one sample in the same fasta file
mirnaseq usegalaxy
8 months ago by demoraesdiogo2017 ▴ 90
3
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2
replies
663
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Relative log expression normalization without negative values
rna-seq
updated 13 months ago by 77k • written 13 months ago by ▴ 90
2
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3
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1.2k
views
96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq single-cell
updated 14 months ago by 77k • written 14 months ago by ▴ 90
0
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1
reply
538
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Comment: Comment: 0% adapter bases after demultiplexing 10x data and "undetermined" sample
15 months ago by demoraesdiogo2017 ▴ 90
0
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3
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538
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0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x BCLconvert illumina snrnaseq
updated 15 months ago by 134k • written 15 months ago by ▴ 90
1
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5
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1.1k
views
how to tell if data was log transformed
UPLC
updated 20 months ago by ★ 25k • written 20 months ago by ▴ 90
0
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0
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1.1k
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Comment: Comment: how to tell if data was log transformed
20 months ago by demoraesdiogo2017 ▴ 90
0
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0
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252
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cytoescape enhancedgraphics image export bug
cytoescape enhancedgraphics
20 months ago by demoraesdiogo2017 ▴ 90
0
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0
replies
418
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3 questions about module membership vs gene significance
WGCNA
2.3 years ago by demoraesdiogo2017 ▴ 90
0
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0
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1.5k
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Comment: Comment: WGCNA for RNA-SEQ DATA
2.3 years ago by demoraesdiogo2017 ▴ 90
0
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0
replies
488
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high resolution deconvolution problem
cibersort deconvolution rna-seq
2.3 years ago by demoraesdiogo2017 ▴ 90
0
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0
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674
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Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
2.3 years ago by demoraesdiogo2017 ▴ 90
0
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1
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674
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Comment: Comment: whole tissue and RNA-seq: can I still study specific cell types?
2.3 years ago by demoraesdiogo2017 ▴ 90
2
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4
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674
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whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
2.3 years ago by demoraesdiogo2017 ▴ 90
0
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0
replies
894
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Comment: Comment: WGCNA module network interpretation
2.3 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
3.9k
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Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
2.3 years ago by demoraesdiogo2017 ▴ 90
0
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1
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3.9k
views
Comment: Comment: How to export a network of a specific module to Cytoscape - Consensus modules /
2.3 years ago by demoraesdiogo2017 ▴ 90
2
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2
replies
894
views
WGCNA module network interpretation
network WGCNA
2.3 years ago by demoraesdiogo2017 ▴ 90
5
votes
9
replies
8.0k
views
6 follow
ANOVA for RNA-seq data?
anova RNA-Seq
updated 2.1 years ago by 8.4k • written 3.8 years ago by ▴ 90
14
votes
8
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8.4k
views
8 follow
correct way of analyzing cell proportions in singlecell data
single-cell RNaseq
updated 19 months ago by • 0 • written 3.1 years ago by ▴ 90
1
vote
1
reply
652
views
gene expression x phenotype correlation
RNA-Seq
updated 2.6 years ago by ★ 6.4k • written 2.6 years ago by ▴ 90
0
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1
reply
605
views
Comment: C: two samples with 0% alignment
2.7 years ago by demoraesdiogo2017 ▴ 90
1
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3
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605
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two samples with 0% alignment
galaxy hisat2 RNA-Seq
2.7 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
498
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Comment: C: anyway to save contaminated samples?
2.7 years ago by demoraesdiogo2017 ▴ 90
2
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5
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498
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anyway to save contaminated samples?
RNA-Seq
2.7 years ago by demoraesdiogo2017 ▴ 90
2
votes
2
replies
602
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blasting unaligned reads on usegalaxy
usegalaxy RNA-Seq hisat2
2.7 years ago by demoraesdiogo2017 ▴ 90
0
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0
replies
456
views
over represented adapter in reverse but not in forward reads?
RNA-Seq
2.7 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
419
views
clusters with no enrichment?
RNA-Seq
2.7 years ago by demoraesdiogo2017 ▴ 90
0
votes
1
reply
651
views
Seurat merge differing number of rows
seurat
updated 2.8 years ago by 20 • written 2.8 years ago by ▴ 90
0
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0
replies
18k
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Comment: C: How To Associate Cpg Coordinate With The Gene Names Or Entrez Id
2.9 years ago by demoraesdiogo2017 ▴ 90
0
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2
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20k
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Comment: A: Differences between FPKM and FPKM-UQ files in gene expression analysis
3.0 years ago by demoraesdiogo2017 ▴ 90
0
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0
replies
8.4k
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Comment: C: correct way of analyzing cell proportions in singlecell data
3.1 years ago by demoraesdiogo2017 ▴ 90
1
vote
6
replies
4.8k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
3.1 years ago by demoraesdiogo2017 ▴ 90
0
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0
replies
4.8k
views
Comment: C: subscript out of bounds in seurat expression matrix
3.1 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
4.8k
views
Comment: C: subscript out of bounds in seurat expression matrix
3.1 years ago by demoraesdiogo2017 ▴ 90
0
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1
reply
4.8k
views
Comment: C: subscript out of bounds in seurat expression matrix
3.1 years ago by demoraesdiogo2017 ▴ 90
0
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0
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1.4k
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Comment: C: Merge enrichement analysis results
3.3 years ago by demoraesdiogo2017 ▴ 90
2
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1
reply
3.4k
views
Answer: A: Heatmap from the RNAseq raw count data
3.3 years ago by demoraesdiogo2017 ▴ 90
0
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0
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485
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comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
3.3 years ago by demoraesdiogo2017 ▴ 90
0
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1
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1.4k
views
Answer: A: Merge enrichement analysis results
3.3 years ago by demoraesdiogo2017 ▴ 90
77 results • Page 1 of 2
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