User: eilluecaf

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eilluecaf0
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Posts by eilluecaf

<prev • 10 results • page 1 of 1 • next >
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Problem with MACS2 results
... Hi, I am trying to analyze some ChIPSeq data from Myxococcus xanthus. I tried this and I obtained the following message: $ callpeak -t /home/eduardo/Documentos/DATOS_TFG/Resultados_Alineamiento/CarD_AntiFLAG_CrecidoLUZ_1.bam -f BAM -g 9.14e+06 -n CarD_AntiCarD_CrecidoLUZ_1 WARNING @ ...
ngs macs2 written 7 weeks ago by eilluecaf0 • updated 7 weeks ago by Chris Fields1.9k
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Comment: C: Bowtie2 to align ChiPSeq Data
... I've done this and I keep getting the same error. When I apply the following lines of the tutorial I get the following > resources <- list(walltime="1:00:00", ntasks=1, ncpus=cores(args), memory="10G") > reg <- clusterRun(args, conffile=".BatchJobs.R", template="slurm.tmpl", Njo ...
written 11 weeks ago by eilluecaf0 • updated 11 weeks ago by genomax49k
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Comment: C: Bowtie2 to align ChiPSeq Data
... The file is in /home/usuario/chipseq/data but I am using chipseq as working directory, in theory it is correct Now it returns me anothe message: > system("./bowtie2-2.3.4.1/bowtie2-build ./data/tair10.fasta ./data/tair10.fasta") # Indexes reference genome ./bowtie2-2.3.4.1/bowtie2-build: ...
written 11 weeks ago by eilluecaf0 • updated 11 weeks ago by genomax49k
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Comment: C: Bowtie2 to align ChiPSeq Data
... I tried this: export PATH=$PATH:/home/usuario/chipseq/bowtie2-2.3.4.1 ...
written 11 weeks ago by eilluecaf0
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Comment: C: Bowtie2 to align ChiPSeq Data
... I have added the directory where is bowtie to the PATH variable. And I returns the following error: system("./bowtie2-2.3.4.1/bowtie2-build ./data/tair10.fasta ./data/tair10.fasta") Traceback (most recent call last): File "./bowtie2-2.3.4.1/bowtie2-build", line 86, in main() ...
written 11 weeks ago by eilluecaf0 • updated 11 weeks ago by genomax49k
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Comment: C: Bowtie2 to align ChiPSeq Data
... Okay, I skipped that step. Now I'm failure on the following line: > system("bowtie2-build ./data/tair10.fasta ./data/tair10.fasta") sh: 1: bowtie2-build: not found I've already installed Bowtie 2 and is in the current directory. Thanks for your attention ...
written 11 weeks ago by eilluecaf0
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Comment: C: Bowtie2 to align ChiPSeq Data
... I tryed to run Bowtie 2 in Ubuntu but it is still giving me error. The error message is the following: bash: module: no se encontró la orden Do I need to install bash or module? ...
written 11 weeks ago by eilluecaf0
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Comment: C: Bowtie2 to align ChiPSeq Data
... I am using Windows and I am running on workstation. My system doesn't have the Modules package, I am going to try to download this package. Sorry, I am a beginner. ...
written 3 months ago by eilluecaf0
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Comment: C: Bowtie2 to align ChiPSeq Data
... Yes, it is the tutorial that I am following ...
written 3 months ago by eilluecaf0
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Bowtie2 to align ChiPSeq Data
... Hi, I am trying to align some ChiPSeq data with bowtie2 but i am getting error. I am usin the SystemPipeR package and I am following the instruction of the tutorial. The error that I have is the following: > moduleload(modules(args)) # Skip if a module system is not used Error in system(paste0 ...
systempiper alignment chip-seq written 3 months ago by eilluecaf0 • updated 3 months ago by h.mon15k

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