User: steven.blanchard92

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Posts by steven.blanchard92

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Comment: C: Error : Duplicate allele added to VariantContext GATK
... Thank you, but I can not change all REF to N. I need REF to annotate deletions ...
written 9 months ago by steven.blanchard920
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Error : Duplicate allele added to VariantContext GATK
... Hello, I download GnomAD vcf files in GRCh38 (hg19 remap). I want to convert this vcf in a table so i try to use VariantsToTable. But i have this error : The provided VCF file is malformed at approximately line number 10609: Duplicate allele added to VariantContext: C line 10609 : 10 310145 ...
vcf gatk malformed variantstotable written 9 months ago by steven.blanchard920 • updated 7 weeks ago by brett0

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