User: Uday Rangaswamy

Reputation:
90
Status:
Trusted
Location:
Indian Institute of Technology, Madras, India
Last seen:
2 days, 21 hours ago
Joined:
10 months, 2 weeks ago
Email:
m*******@gmail.com

Posts by Uday Rangaswamy

<prev • 143 results • page 1 of 15 • next >
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Comment: C: install Bioconductor package and its dependencies
... Done! Like you said, few of the dependencies such as rtracklayer, libiconv and gsl belonged to different versions or not present at all, for which I had to (re)install using conda and start a new R instance at the end of each installation, to check if it's properly installed or not. Thanks for your ...
written 5 days ago by Uday Rangaswamy90
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Comment: C: install Bioconductor package and its dependencies
... You mean to say install r and r studio using conda commands and then trying the same? ...
written 6 days ago by Uday Rangaswamy90
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Comment: C: install Bioconductor package and its dependencies
... I need it to work in R studio. ...
written 6 days ago by Uday Rangaswamy90
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Comment: C: install Bioconductor package and its dependencies
... On running the following on R studio : if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("MotIV", version = "3.8") ...
written 6 days ago by Uday Rangaswamy90
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Comment: C: install Bioconductor package and its dependencies
... RandPSSMGen.cpp:32:10: fatal error: gsl/gsl_histogram.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. make: *** [/home/uday/anaconda3/envs/rstudio/lib/R/etc/Makeconf:167: RandPSSMGen.o] Error 1 ERROR: compilation failed for pack ...
written 6 days ago by Uday Rangaswamy90
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Comment: C: install Bioconductor package and its dependencies
... Still not working in R. ...
written 6 days ago by Uday Rangaswamy90
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Comment: C: install Bioconductor package and its dependencies
... On doing so, there was slight progress and then it stopped at : RandPSSMGen.cpp:32:10: fatal error: gsl/gsl_histogram.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. make: *** [/home/uday/anaconda3/envs/rstudio/lib/R/etc/Makeconf:1 ...
written 6 days ago by Uday Rangaswamy90
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Comment: C: install Bioconductor package and its dependencies
... On trying to install motifbreakerR, I get the following errors and warnings : *** Could not run GSL test program, checking why... *** The test program failed to compile or link. See the file config.log for the *** exact error that occured. This usually means GSL was incorrectly installe ...
written 6 days ago by Uday Rangaswamy90
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Comment: C: BEDOPS bedmap tool usage
... Thanks a lot for such detailed explanation :). ...
written 25 days ago by Uday Rangaswamy90
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BEDOPS bedmap tool usage
... How is the mean of signal intensity being calculated in a context where the first snippet is reference bed file and the second is the map bed file? First snippet chr1 1067800 1069801 chr1 1129419 1131420 chr1 1129716 1131717 chr1 1131195 1133196 chr1 1131481 1133482 chr1 1 ...
bedops sequence bedmap dna written 25 days ago by Uday Rangaswamy90 • updated 25 days ago by Alex Reynolds27k

Latest awards to Uday Rangaswamy

Centurion 7 weeks ago, created 100 posts.
Supporter 9 months ago, voted at least 25 times.

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