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questions
1
vote
4
replies
2.3k
views
IGV batch scripts
IGV
3.2 years ago by
bioinfo456
▴ 150
5
votes
3
replies
1.9k
views
quantile normalization in deseq2
quantile_normailzation
Deseq2
rna-seq
updated 3.3 years ago by
ATpoint
84k • written 3.3 years ago by
bioinfo456
▴ 150
4
votes
12
replies
3.1k
views
STAR aligner index generating issues
RNA-Seq
alignment
star
genome
updated 3.6 years ago by
Biostar
20 • written 3.7 years ago by
bioinfo456
▴ 150
5
votes
3
replies
5.9k
views
STAR --quantMode GeneCounts vs HTSeq-count
star
HTSeq
next-gen
sequencing
RNA-Seq
updated 3.7 years ago by
h.mon
35k • written 3.7 years ago by
bioinfo456
▴ 150
4
votes
3
replies
2.3k
views
bedops bedmap operation in python
python
bedops
bedmap
updated 2.8 years ago by
Ram
44k • written 5.4 years ago by
bioinfo456
▴ 150
7
votes
17
replies
4.3k
views
eQTL analysis considering P-values
eQTL
SNP
R
genome
updated 5.4 years ago by
juhuvn
• 0 • written 5.9 years ago by
bioinfo456
▴ 150
13
votes
31
replies
4.3k
views
Feature extraction from DNA sequence
snp
machine learning
deep learning
updated 5.5 years ago by
pltbiotech_tkarthi
▴ 180 • written 5.8 years ago by
bioinfo456
▴ 150
4
votes
5
replies
2.1k
views
Having issues using UCSC kent tools to convert bigwig file to wig file
software error
sequence
updated 5.5 years ago by
GenoMax
145k • written 5.5 years ago by
bioinfo456
▴ 150
0
votes
1
reply
429
views
SNP-gene matrix construction
SNP
gene
R
5.6 years ago by
bioinfo456
▴ 150
4
votes
7
replies
2.7k
views
Hg19 reference genome for bedtools getfasta
assembly
genome
5.6 years ago by
bioinfo456
▴ 150
0
votes
1
reply
1.8k
views
Issues with anaconda rstudio while using on a remote server
R
anaconda
rstudio
5.6 years ago by
bioinfo456
▴ 150
5
votes
2
replies
3.4k
views
BEDOPS bedmap tool usage
bedops
bedmap
dna
sequence
updated 5.7 years ago by
Alex Reynolds
35k • written 5.7 years ago by
bioinfo456
▴ 150
4
votes
2
replies
1.0k
views
Plotting DNA overlaps considering signal density
dna
r
plot
updated 5.7 years ago by
Alex Reynolds
35k • written 5.7 years ago by
bioinfo456
▴ 150
6
votes
8
replies
1.4k
views
Data downloads from ENCODE
encode
updated 5.7 years ago by
Kevin Blighe
88k • written 5.7 years ago by
bioinfo456
▴ 150
5
votes
4
replies
5.4k
views
Assembly conversion of large BED files
Assembly
ensembl
updated 5.7 years ago by
Alex Reynolds
35k • written 5.7 years ago by
bioinfo456
▴ 150
2
votes
8
replies
1.6k
views
To obtain transcription start site from a dna sequence
dna
sequence
updated 5.8 years ago by
Alex Reynolds
35k • written 5.8 years ago by
bioinfo456
▴ 150
7
votes
16
replies
4.4k
views
VEP outputs more rs ids than input, why?
SNP
ensembl
vep
5.8 years ago by
bioinfo456
▴ 150
9
votes
11
replies
1.9k
views
Assembly used in Variant Effect Predictor
SNP
ensembl
vep
updated 5.8 years ago by
Emily
23k • written 5.8 years ago by
bioinfo456
▴ 150
15
votes
35
replies
4.2k
views
To obtain upstream DNA sequence by giving location
SNP
R
genome
updated 5.8 years ago by
ATpoint
84k • written 5.8 years ago by
bioinfo456
▴ 150
3
votes
2
replies
960
views
Sequence extraction chromosome wise
SNP
R
genome
5.8 years ago by
bioinfo456
▴ 150
9
votes
16
replies
2.2k
views
feature extraction from SNPs in R
R
gene
sequence
SNP
5.8 years ago by
bioinfo456
▴ 150
5
votes
14
replies
1.8k
views
Alzheimer's disease and its classification
SNP
R
machine learning
5.8 years ago by
bioinfo456
▴ 150
1
vote
2
replies
1.0k
views
Complete list of rs ids and thier corresponding sequence for the human genome
genome
ncbi
SNP
updated 5.9 years ago by
finswimmer
16k • written 5.9 years ago by
bioinfo456
▴ 150
6
votes
6
replies
1.7k
views
Comparing work done on RNA seq data
RNA-Seq
differential expression analysis
deseq2
updated 6.3 years ago by
Biostar
20 • written 6.5 years ago by
bioinfo456
▴ 150
8
votes
11
replies
3.2k
views
Note on DESeq2
RNA-Seq
DESeq2
updated 6.4 years ago by
h.mon
35k • written 6.4 years ago by
bioinfo456
▴ 150
26
votes
9
replies
11k
views
6 follow
DESeq2 modelling and Wald's test
RNA-Seq
DESeq2
updated 15 months ago by
Picasa
▴ 650 • written 6.4 years ago by
bioinfo456
▴ 150
2
votes
5
replies
2.2k
views
Null hypothesis in DESeq2
null hypothesis
DESeq2
6.4 years ago by
bioinfo456
▴ 150
16
votes
16
replies
3.4k
views
Using DESeq2 results for building a classifier
deseq2
RNA-Seq
differentially expressed genes
6.5 years ago by
bioinfo456
▴ 150
7
votes
7
replies
1.8k
views
Differential gene expression analysis
deseq2
RNA-Seq
differential expressed genes
updated 6.5 years ago by
zx8754
12k • written 6.5 years ago by
bioinfo456
▴ 150
7
votes
21
replies
2.5k
views
Differential expression gene analysis
rna-seq
Deseq2
updated 6.5 years ago by
h.mon
35k • written 6.5 years ago by
bioinfo456
▴ 150
2
votes
2
replies
1.5k
views
differential expression analysis
RNA-Seq
deseq2
differential expression analysis
updated 6.5 years ago by
caggtaagtat
★ 1.9k • written 6.5 years ago by
bioinfo456
▴ 150
2
votes
6
replies
3.3k
views
Differential expression gene analysis
rna-seq
R
6.5 years ago by
bioinfo456
▴ 150
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