User: medelin.ocejo

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Posts by medelin.ocejo

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Comment: C: Kraken - incomplete taxonomy levels/ranks in assignment
... It seems that the problem is in the NCBI database. Thanks for your reply! ...
written 10 weeks ago by medelin.ocejo0
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Comment: C: Kraken - incomplete taxonomy levels/ranks in assignment
... Hi @Sej Modha This is the script ran: kraken --threads 20 --db /data/db_dir/krakken_db Sample1_R1.bam Sample1_R2.bam --paired > kraken_out/Sample1.kraken kraken-mpa-report --db /data/db_dir/krakken_db Sample1.kraken > kraken_report/Sample1.krakenReport ...
written 3 months ago by medelin.ocejo0
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Kraken - incomplete taxonomy levels/ranks in assignment
... Hi all! In the output of Kraken, I got many assignments with uncomplete taxonomic levels like these: d__Bacteria|p__Cyanobacteria|o__Pleurocapsales|g__Stanieria d__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|s__Calyptogena_okutanii_thioautotrophic_gill_symbiont In the first case, ** ...
kraken assignment taxonomy ranks written 3 months ago by medelin.ocejo0

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