User: fanyucai1
fanyucai1 • 0
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Posts by fanyucai1
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... hello everyone, i use the CIRI to get the bed file of circRNA.
But how can i get the circRNA sequence?
I try to use find_circ,but could only get the spliced reads.
what should i do? ...
written 2.4 years ago by
fanyucai1 • 0
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2.4 years ago by
Kevin Blighe ♦ 69k
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... Thank you for your reply.
The SEQanswers link as follows:
http://seqanswers.com/forums/showthread.php?t=4643
And my command as follows:
trainGlimmerHMM scaffold.fna exon.txt -i 0,40,100 -d out/
scaffold.fna is my assembly genome
exon.txt is exon coordinates from PASA output
I both use the pr ...
written 2.9 years ago by
fanyucai1 • 0
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... when I use GlimmerHMM to predict gene, I get erro message as follows:
sh: line 1: 20291 Segmentation fault (core dumped) /home/fanyucai/software/GlimmerHMM/GlimmerHMM/train/score train.acc train.facc train.don train.fdon score.acc score.don 1 1 1 > res.temp
ERROR 69: /home/fanyucai/software ...
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