User: fanyucai1

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fanyucai10
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Posts by fanyucai1

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how to get circRNA fasta sequence from CIRI bed
... hello everyone, i use the CIRI to get the bed file of circRNA. But how can i get the circRNA sequence? I try to use find_circ,but could only get the spliced reads. what should i do? ...
circrna analysis written 2.4 years ago by fanyucai10 • updated 2.4 years ago by Kevin Blighe69k
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Answer: A: erro when I run the GlimmerHMM
... Thank you for your reply. The SEQanswers link as follows: http://seqanswers.com/forums/showthread.php?t=4643 And my command as follows: trainGlimmerHMM scaffold.fna exon.txt -i 0,40,100 -d out/ scaffold.fna is my assembly genome exon.txt is exon coordinates from PASA output I both use the pr ...
written 2.9 years ago by fanyucai10
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erro when I run the GlimmerHMM
... when I use GlimmerHMM to predict gene, I get erro message as follows: sh: line 1: 20291 Segmentation fault (core dumped) /home/fanyucai/software/GlimmerHMM/GlimmerHMM/train/score train.acc train.facc train.don train.fdon score.acc score.don 1 1 1 > res.temp ERROR 69: /home/fanyucai/software ...
software error gene written 2.9 years ago by fanyucai10 • updated 15 months ago by Biostar ♦♦ 20

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