User: lbroetto

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lbroetto0
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Posts by lbroetto

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hmmsearch didn't work with nucleotide genome
... Hi, Im trying to use hmmsearch to identify genes coding for a protein family. To achieve this Im using a hidden Markov model made from an Pfam alignment against a genome (a nucleotide not a predicte proteome). But It is returning no hits. This is the command Im using: >hmmsearch --domtblout Bbas ...
tool hmmsearch hmmer nucleotide genome genome written 3 months ago by lbroetto0 • updated 3 months ago by Alex Reynolds24k

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