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questions
0
votes
7
replies
1.3k
views
What is wrong with my NCBI esearch command for 16S rRNA?
16S
NCBI
Entrez
assembly
updated 12 months ago by
GenoMax
146k • written 12 months ago by
Morgan S.
▴ 90
0
votes
0
replies
463
views
Divergence dates change when pruning chronogram
evolution
R
ape
chronogram
phylogenetics
14 months ago by
Morgan S.
▴ 90
10
votes
19
replies
3.0k
views
Redirecting pHMMER output to /dev/null
annotation
protein
HMMER
gene
genome
updated 19 months ago by
Md
▴ 10 • written 5.5 years ago by
Morgan S.
▴ 90
2
votes
2
replies
907
views
Help with e-utils: Need one assembly accession from one protein accession
ncbi
protein
accession
genome
database
updated 2.2 years ago by
vkkodali_ncbi
★ 3.7k • written 2.2 years ago by
Morgan S.
▴ 90
3
votes
2
replies
1.1k
views
Can I remove the control in differential expression analysis?
expression
differential
deseq2
analysis
rnaseq
3.1 years ago by
Morgan S.
▴ 90
1
vote
2
replies
1.3k
views
Advice on organizing large GSVA heatmap
rnaseq
gsva
heatmap
3.1 years ago by
Morgan S.
▴ 90
1
vote
4
replies
1.0k
views
NCBI reported coverage from long and short reads
pacbio
ncbi
genome
illumina
21 months ago by
Morgan S.
▴ 90
3
votes
3
replies
908
views
Need guidance for RNA_seq analysis of Ecoli with expression vector
RNA-Seq
bacteria
transcriptome
Assembly
alignment
3.8 years ago by
Morgan S.
▴ 90
0
votes
0
replies
897
views
Did I do this right? Testing efficiency of poly(A) tailing.
RNA-Seq
polyadenylation
RNA
bacteria
3.9 years ago by
Morgan S.
▴ 90
1
vote
2
replies
2.2k
views
Subset Function in Ballgown
transcriptome
differential expression
updated 4.3 years ago by
zhhxu9
▴ 20 • written 4.9 years ago by
Morgan S.
▴ 90
0
votes
0
replies
713
views
Counting Genomes from NCBI and GOLD
genome
single cell
ncbi
gold
metagenome
4.5 years ago by
Morgan S.
▴ 90
4
votes
3
replies
2.2k
views
Top hit from phmmer
hmmer
phmmer
gene
annotation
genome
updated 4.7 years ago by
tayab soomro
• 0 • written 5.6 years ago by
Morgan S.
▴ 90
4
votes
8
replies
1.7k
views
Diploid genome gene annotation
genome
diploid
gene
annotation
5.5 years ago by
Morgan S.
▴ 90
0
votes
5
replies
3.2k
views
Genome Guided Transcriptome assembly
RNA-Seq
Assembly
genome
transcriptome
updated 5.6 years ago by
Buffo
★ 2.4k • written 5.6 years ago by
Morgan S.
▴ 90
0
votes
6
replies
1.4k
views
Mapping Gene Positions onto a Genome
genome
annotation
R
5.6 years ago by
Morgan S.
▴ 90
0
votes
0
replies
995
views
Normalizing CAZy data
annotation
cazy
genome
fungi
enzymes
5.8 years ago by
Morgan S.
▴ 90
1
vote
8
replies
2.3k
views
Targeted Loci BLAST: No Significant Similarity Found
BLAST
NCBI
genome
fungi
6.0 years ago by
Morgan S.
▴ 90
1
vote
4
replies
1.3k
views
Opinion on best way to taxonomically classify a genome
genome
phylogenomics
orthologs
taxonomy
updated 6.1 years ago by
Carambakaracho
★ 3.3k • written 6.1 years ago by
Morgan S.
▴ 90
8
votes
10
replies
4.9k
views
7 follow
To reassemble Illumina and PacBio, or just upgrade previous assembly with PacBio?
Assembly
genome
illumina
pacbio
updated 6.2 years ago by
harish
▴ 470 • written 6.2 years ago by
Morgan S.
▴ 90
1
vote
3
replies
1.5k
views
Confused on PacBio outputs
pacbio
long read
assembly
genomics
6.2 years ago by
Morgan S.
▴ 90
0
votes
2
replies
1.8k
views
Taxonomy assignment from draft genome
whole genome
taxonomy
genome
fungi
updated 6.4 years ago by
lakhujanivijay
5.9k • written 6.4 years ago by
Morgan S.
▴ 90
0
votes
12
replies
2.7k
views
Combining Maker and Blast2Go
annotation
genome
fungi
updated 6.4 years ago by
lieven.sterck
15k • written 6.4 years ago by
Morgan S.
▴ 90
2
votes
3
replies
3.3k
views
Determining ploidy from fungal genomes
assembly
haploid
diploid
fungi
genome
updated 6.4 years ago by
Carambakaracho
★ 3.3k • written 6.4 years ago by
Morgan S.
▴ 90
0
votes
3
replies
2.3k
views
Augustus Segmentation fault error message
augustus
gene prediction
annotation
updated 6.4 years ago by
Ram
44k • written 6.4 years ago by
Morgan S.
▴ 90
1
vote
2
replies
1.3k
views
MAKER annotation pipeline output
genome
annotation
MAKER
6.4 years ago by
Morgan S.
▴ 90
0
votes
3
replies
1.7k
views
Masking repeats in fungal genomes
annotation
fungi
repeat masking
updated 6.5 years ago by
WouterDeCoster
47k • written 6.5 years ago by
Morgan S.
▴ 90
0
votes
1
reply
1.9k
views
Fungal genome annotation with or without RNA seq data
genome
rna-seq
fungi
annotation
6.6 years ago by
Morgan S.
▴ 90
27 results • Page
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