User: bioinfo

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bioinfo0
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Posts by bioinfo

<prev • 9 results • page 1 of 1 • next >
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Comment: C: how to remove specific sequences from multi-fasta file which contains N ?
... have you found a solution? ...
written 7 days ago by bioinfo0
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Comment: C: Extract A Group Of Fasta Sequences From A File
... I tried this I get Error Traceback (most recent call last): File "/usr/local/bin/pyfasta", line 8, in sys.exit(main()) File "/usr/local/lib/python3.8/site-packages/pyfasta/__init__.py", line 38, in main globals()[action](sys.argv[2:]) File "/usr/local/lib/pyth ...
written 24 days ago by bioinfo0
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Answer: A: Build consensus sequences from repeat masker output
... there is a script shipped with repeatMasker directory will solve your struggle I assume can be found here > repeatMasker/util/queryRepeatDatabase.pl What you can do is to get from the database all repetitions of the corresponding taxa you are interested in. apply as below: util/queryRe ...
written 4 weeks ago by bioinfo0
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Comment: C: Extraction Of Header Of Sequences In Fasta File
... what about i want to extract the header and their belonging sequences? ...
written 3 months ago by bioinfo0
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Comment: C: How to run RepeatMasker only with my own library?
... I have been using this tool quite sometimes, I believe if I used -lib flag repeat masker will read only from it. that's why we are able to use either - Species-specific or -lib flag ...
written 9 months ago by bioinfo0
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Answer: A: How to run RepeatMasker only with my own library?
... when you use -lib flag Repeatmasker read only the custom library ...
written 9 months ago by bioinfo0
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Comment: C: Detection Transposable Elements in eukaryote
... must of these tools outdated and require a reference to as an input ...
written 2.1 years ago by bioinfo0
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Answer: A: ReapeatMasker only uses E. coli insertion elements
... Because it checks in default mode for them. When you want to skip the insertion elements check, you have to give the option -no_is in your string. ...
written 2.2 years ago by bioinfo0
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Genome Annotation, specific pipeline
... hello everyone im facing some difficulties to re annotate mygene, i been reading a lot about and i'm kind of lost , im working with camel genome scaffold level, im wondering if there are specific tool or pipeline to annotate it. ...
annotation written 2.6 years ago by bioinfo0

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