User: saadleeshehreen

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Posts by saadleeshehreen

<prev • 22 results • page 1 of 3 • next >
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barplot in R
... Hi, I have a dataset like following Drug-class CRISPR-cas No CRISPR-cas Tetracyclin(3356) 46 54 Aminoglycoside(5769) 92 8 Fuscidic acid (3) 33 67 Macrolide(2238) 16 84 Oxazolidinone(3) 100 0 I ran the sample code Drugclass <- c("Tetracyclin", "Aminoglycosid ...
R written 9 hours ago by saadleeshehreen30 • updated 6 hours ago by Kevin Blighe19k
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Comment: C: awk command to count specific field
... Thanks. It works for me. :) ...
written 4 days ago by saadleeshehreen30
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Comment: C: awk command to count specific field
... Hi, Thanks. I have other related problem. My file like this: 10 Lachnoclostridium sp. 0 0 0 0 1 11 Haemophilus ducreyi 0 0 0 0 1 12 Clostridiales bacterium 0 0 0 0 1 13 Escherichia albertii 0 1 ...
written 4 days ago by saadleeshehreen30 • updated 4 days ago by Pierre Lindenbaum107k
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awk command to count specific field
... Hi, I have a file with the following content. Now I want to count how many of them have 1 in the field -n2. Bacteroides fragilis,0 Bacteroides fragilis,0 Salmonella enterica,1 Salmonella enterica,1 Salmonella enterica,1 Bacteroides fragilis,0 ........................... ...
command written 4 days ago by saadleeshehreen30 • updated 4 days ago by cpad01125.3k
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fasta to stockholm
... Hi, I am trying to convert a fasta file (protein) to Stockholm formate by using the following site: http://sequenceconversion.bugaco.com/converter/biology/sequences/fasta_to_stockholm.php But it generates an error message ( Sequences must all be the same length). My proteins are different length. ...
sequence written 10 days ago by saadleeshehreen30
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Comment: C: Building Hidden Markov Model (HMM) for proteins
... Thanks. From their manual I came to know, I need to give .sto file as input to get a .hmm file. Does Clustal give .sto file as output? Or I have to use different software to convert my file after clustal? Cheers ...
written 10 days ago by saadleeshehreen30
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Building Hidden Markov Model (HMM) for proteins
... Hi, I have 460 amino acid sequences for a specific protein family X. I want to make a HMM model for those sequences. I will use that HMM to search homologs of X / neighbour of X in some bacterial genomes. How can I make a HMM model ? Is there any software available? What is the step to do that? ...
sequence written 11 days ago by saadleeshehreen30 • updated 11 days ago by toheitka160
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Comment: C: grep things and counting line number in R
... Oh..thanks a lot .got it ...
written 25 days ago by saadleeshehreen30
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Comment: C: grep things and counting line number in R
... Hi, I was looking for a command in R. I know 'grep' and 'wc -l' work in shell. ...
written 25 days ago by saadleeshehreen30
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grep things and counting line number in R
... Hi, I am a beginner in R. I want to grep "x" from file1 and pipe it with line count command to know how many lines in file1 contain "X". What is the command for it? ...
R written 25 days ago by saadleeshehreen30 • updated 25 days ago by zx87544.3k

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