User: sujasubramanian

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Posts by sujasubramanian

<prev • 32 results • page 1 of 4 • next >
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Transcription factors which act with CTCF
... Can anybody help me to find a TF which interact with CTCF? Currently, I am using K562 cell expression data, with CTCF and EP300 can anybody suggest any other coactivator which acts with CTCF in the same cell. If any GEO accession no is available that will be more helpful. ...
genome written 4 months ago by sujasubramanian50
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Comment: C: Affymetrix Human Genome U133 Plus 2.0 Array sequence analysis
... IS THERE IS ANY WAY TO PRODUCE MAS5 S/W RESULT WITH BOOLEAN LOGIC, PRESENCE 'p', ABSENCE 'A', LIKE. I AM USING TWO DATA SET ONE IS .CEL FILES I NORMALIZED WITH RMA, ANOTHER ONE GIVE EXPRESSION VALUES FROM MAS5 S/W INTENSITY VALUES, WITH BOOLEAN VALUES ...
written 4 months ago by sujasubramanian50
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Regarding MAS5 software data format
... Hello, i am using two dataset, one is .CEL files i normalize the intensity with RMA, but my second dataset also from MAS5 software but the format is different, by looking the data we can easily classify them with presence ('P') and absence ('A') of particular probe_id. Is there is anyway to produ ...
sequencing written 4 months ago by sujasubramanian50
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Comment: C: illumina HumanHT-12 v4.0 expression beadchip
... thank you kevin you always there whenever i need help.. thank you ...
written 5 months ago by sujasubramanian50
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illumina HumanHT-12 v4.0 expression beadchip
... Can anybody help me to point the difference between illumina HumanHT-12 v4.0 expression beadchip and affymetrix gene chip. ...
sequencing written 5 months ago by sujasubramanian50
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Comment: C: Affymetrix Human Genome U133 Plus 2.0 Array sequence analysis
... biocLite('affy') library(affy) ensembl=useMart("ensembl") ensembl=useDataset("hsapiens_gene_ensembl",mart=ensembl) MyBioinfData<-ReadAffy() eset.rma<-rma(MyBioinfData) affy package is used for normalisation, and get the eset (expression set data ), i directly link thi ...
written 5 months ago by sujasubramanian50 • updated 5 months ago by Kevin Blighe45k
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Comment: C: Affymetrix Human Genome U133 Plus 2.0 Array sequence analysis
... from where i get the infn about pseudogenes, is that ok i reject them from my analysis ...
written 5 months ago by sujasubramanian50
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Comment: C: Affymetrix Human Genome U133 Plus 2.0 Array sequence analysis
... hello, i have used the support materials from affymetrix support site, instead of using refseq/ensembl i am using alignment column vales for my studies , so i can get multiple probeid for each gene i considered each differently with this alignment infn, but i come across a problem related with s ...
written 5 months ago by sujasubramanian50 • updated 5 months ago by Kevin Blighe45k
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Comment: C: Affymetrix Human Genome U133 Plus 2.0 Array sequence analysis
... sorry by mistake i post this here ...
written 6 months ago by sujasubramanian50
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Comment: A: Affymetrix Human Genome U133 Plus 2.0 Array sequence analysis
... can anybody help me to find a good journal for publishing my research work, i am running out of time .Bioinformatics (SCI indexed) journal is preferable. ...
written 6 months ago by sujasubramanian50

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Popular Question 5 months ago, created a question with more than 1,000 views. For Affymetrix Human Genome U133 Plus 2.0 Array - probe annotation with biomaRt

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