User: pagetbailly.philippe

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Posts by pagetbailly.philippe

<prev • 6 results • page 1 of 1 • next >
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Comment: C: RNA-seq analysis between three conditions
... I will try these. Thanks again ! ...
written 14 months ago by pagetbailly.philippe0
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Comment: C: RNA-seq analysis between three conditions
... Can you give me any recommandation ? I'm fairly new to bioinformatics :) ...
written 14 months ago by pagetbailly.philippe0
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Comment: C: RNA-seq analysis between three conditions
... I'm starting to think that DEG analysis can't answer the question i'm asking. Thanks you very much for your time ! ...
written 14 months ago by pagetbailly.philippe0
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Comment: C: RNA-seq analysis between three conditions
... Hi, the average Phred score was 33. (40 million reads above 32). We obtained 50 million reads for each replicate (46 min to 57 max). This fourth condition would have been nice indeed. ...
written 14 months ago by pagetbailly.philippe0
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Comment: C: RNA-seq analysis between three conditions
... Hi, in deed the isoform in the third condition is the same as the one in the second condition. Long story short, the two isoforms come from an alternative splicing. The isoform2 from the third condition was shown to have elusive effects in the litterature yet it accounts for 90% of mRNA from the gen ...
written 14 months ago by pagetbailly.philippe0
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RNA-seq analysis between three conditions
... Hi everyone, The problem I have isn't really a bioinformatic problem but I came across a hard nut to crack when analyzing my RNA-seq results. I had 3 conditions in triplicate: - 1 = control - 2= expressing 2 isoforms of a protein - 3= expressing 1 isoform of the protein Seq generated 50 million 75 ...
de cuffdiff rna-seq written 14 months ago by pagetbailly.philippe0

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