User: Timze W
Timze W • 20
- Reputation:
- 20
- Status:
- New User
- Location:
- Last seen:
- 2 months, 2 weeks ago
- Joined:
- 11 months ago
- Email:
- w******@gmail.com
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Posts by Timze W
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... Thanks for your help. I have finally solved this problem, but what I use is the other tool called ChAMP., it can accept the beta value matrix as input.
AND for the TCGAbiolinks, I have noticed it have this function, but when I read its code in GitHub, it seems do the same works for DMRs just as fo ...
written 3 months ago by
Timze W • 20
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... Hello dears,
We can index the files to access random sequences fast, and it should be sorted before indexed for the SAM/BAM.
But when it turns to FASTA files, I could not understand why we can directly index without sort first ?
samtools faidx
Are there any easy explanation? THANKS ...
written 4 months ago by
Timze W • 20
• updated
4 months ago by
finswimmer ♦ 9.9k
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... Hi dear all, after downloaded the illumina 450K methylation chip data from TCGA, I have identified the DMCs with Fisher test for each probe, but I have no idea to identify the **DMRs**. For example I wanna find out the different methy- regions with 1Kb long. Any tool can do it directly?
Could any ...
written 5 months ago by
Timze W • 20
• updated
3 months ago by
Kevin Blighe ♦ 37k
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... I will update this post as soon as there is new progress. ...
written 11 months ago by
Timze W • 20
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... Hello, as a newbie, I do get some troubles in converting ensembl ID to gene SYMBOL.
For example, when I convert the "ENSG00000158164" to SYMBOL in the R library "org.Hs.eg.db", it has 2 symbol names. This is my code and output:
> select(org.Hs.eg.db, keys="ENSG00000158164",columns=c("CHR" ...
written 11 months ago by
Timze W • 20
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