User: g.e.novakovsky

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Posts by g.e.novakovsky

<prev • 4 results • page 1 of 1 • next >
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Pathway enrichment analysis of gene set
... Hi everyone, I have list of genes (differentially expressed for example) and I want to obtain list of enriched pathways (not GO terms), what is the best tool or database to do it? Should I use KEGG or REACTOME database for this purpose or something else? I know, everyone has some preferences here, ...
pathway enrichment analysis written 27 days ago by g.e.novakovsky10 • updated 27 days ago by EagleEye5.5k
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Stringtie output files
... I am a new user of StringTie and probably this question is very simple but I still don't get it... I have my sorted bam files (HISAT2 output, genome v19) and here is my StringTie command (v1.3.4): stringtie hisat2_work/hisat2/alignments.sorted.bam -o stringtie_results/transcripts.gtf -G genes.G ...
gtf stringtie rna-seq written 4 weeks ago by g.e.novakovsky10 • updated 4 weeks ago by Kevin Blighe24k
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Comment: C: Kmer enrichment analysis
... Thank you very much for your response! ...
written 3 months ago by g.e.novakovsky10
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Kmer enrichment analysis
... Hi everyone, I have a list of DNA sequences in file A (fasta format) and another list of sequences in file B. There are nearly 200 sequences in file A (average length is 300 bp) and 1300 sequences in file B (average length is the same). I would like to compare these two files and get those kmers, ...
genome sequence written 3 months ago by g.e.novakovsky10

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