User: monukmr98

gravatar for monukmr98
monukmr9860
Reputation:
60
Status:
Trusted
Location:
United States
Last seen:
3 years, 9 months ago
Joined:
7 years, 1 month ago
Email:
m********@gmail.com

about me

Posts by monukmr98

<prev • 25 results • page 1 of 3 • next >
0
votes
0
answers
1.5k
views
0
answers
Comment: C: Artifactual mutations in CCLE data
... Thanks russ In their preferred dataset, CCLE people have mentioned that the following variants were filtered out: common polymorphisms, allelic fraction < 10%, putative neutral variants (missenses present in less than 2 warm-blooded vertebrates), located outside of the CDS for all transcri ...
written 3.8 years ago by monukmr9860
0
votes
0
answers
1.5k
views
0
answers
Artifactual mutations in CCLE data
... Hi there, I am confused whether some of the mutations reported in some big study like CCLE are artifactual mutations. I have been asked this question many a times, but don't understand what artifactual mutations are ? Are artifactual mutations related to: platform related - eg. illumina, 454 etc ...
artifactual mutations ccle written 3.8 years ago by monukmr9860
0
votes
1
answer
1.3k
views
1
answers
Comment: C: impact of recurrent SNVs?
... Hi mangfu100 I have confusion regarding mutational artifacts. what are these artifacts. please help to make this concept clear to me. regards ...
written 3.8 years ago by monukmr9860
0
votes
0
answers
2.7k
views
0
answers
Comment: C: Confusion regarding selection of TCGA maf files for analysis
... If I come just down to that page (https://wiki.nci.nih.gov/display/TCGA/TCGA+MAF+Files#TCGAMAFFiles-GBM:Glioblastomamultiforme) under the HNSC tissue HNSC: Head and Neck squamous cell carcinoma I get total 3 files for HNSC and latest deploy date is for following file having 279:279 (tumor:normal) ...
written 4.2 years ago by monukmr9860
0
votes
0
answers
2.7k
views
0
answers
Comment: C: Confusion regarding selection of TCGA maf files for analysis
... Thanks poisonAlien I downloaded the recent file in GBM (i.e. 27-JUN-13; last link in GBM section ) and found its identical to the (ii) (b) file mentioned in my query. So can I proceed with this Other query is: in MAF+Dashboard facility ( https://confluence.broadinstitute.org/display/GDAC/MAF+Dash ...
written 4.2 years ago by monukmr9860
0
votes
0
answers
2.7k
views
0
answers
Comment: C: Confusion regarding selection of TCGA maf files for analysis
... Thanks poisonAlien, I downloaded the recent file in GBM (i.e. 27-JUN-13; last link in GBM section ) and found its identical to the (ii) (b) file mentioned in my query. So can I proceed with this Other query is: in MAF+Dashboard facility ( https://confluence.broadinstitute.org/display/GDAC/MAF+Das ...
written 4.2 years ago by monukmr9860
1
vote
0
answers
2.7k
views
0
answers
Confusion regarding selection of TCGA maf files for analysis
... Hi I am struggling with selection of maf files for mutation analyses on TCGA patients. Here is the actual problem. Say I want to do somatic mutation analysis for GBM patients. So there are two types I can get the data from (i) From TCGA-DATA MATRIX (https://tcga-data.nci.nih.gov/tcga/dataAccessMa ...
maf tcga dashboard data matrix written 4.2 years ago by monukmr9860 • updated 2.1 years ago by Biostar ♦♦ 20
1
vote
0
answers
3.4k
views
0
answers
survival analysis of TCGA data
... hi there I am doing some survival analysis on TCGA patients of my interest. I have to draw Kaplan-meier curve, which I am able to do with "survival" package in R using their default "aml" data. Same format I applied on my samples' data and got some curve. But, I have doubt whether I am doing it rig ...
kaplan-meier curve tcga data censored data written 4.4 years ago by monukmr9860
0
votes
2
answers
1.6k
views
2
answers
Comment: C: Clustering Softwares For Clustering Genes Expression Or Drugs Activity
... thanks sukhdeep for help ...
written 6.6 years ago by monukmr9860
3
votes
2
answers
1.6k
views
2
answers
Clustering Softwares For Clustering Genes Expression Or Drugs Activity
... Hi all I want to cluster genes on the basis of their expression values. Can someone suggest me good "CLUSTERING SOFTWARES" (generic or specialised); where I can give input file of correlation matrix of expression values of genes in different samples and get the clusters based upon correlation value ...
software gene expression clustering written 6.6 years ago by monukmr9860 • updated 21 months ago by theobroma221.1k

Latest awards to monukmr98

Popular Question 4.2 years ago, created a question with more than 1,000 views. For How To Convert Wig File Format Into Fasta Format ?
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Htseq Count Not Working
Popular Question 6.3 years ago, created a question with more than 1,000 views. For Htseq Count Not Working

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1890 users visited in the last hour