User: hosein_salehi6

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Posts by hosein_salehi6

<prev • 29 results • page 1 of 3 • next >
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Comment: C: How I can find QTLs regions for coordinates in sheep genome by shell
... I mean with shell linux, Do you have another suggestion? ...
written 4 weeks ago by hosein_salehi60
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Comment: C: How I can find QTLs regions for coordinates in sheep genome by shell
... Hi, Yes , is better by shell ...
written 4 weeks ago by hosein_salehi60
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convert cm(Centimorgan) to bp(Base Pair) by shell
... I have a .txt file like: > Chromosome Position_cm Range_cm > 1 87.3 81.03-81.23 > 2 305 248.8-323.2 > 3 204.7 209.12-209.32 > 4 137 ...
genome written 5 weeks ago by hosein_salehi60
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Comment: C: How I can find flanking regions
... How about Oar_v4.0? , because I think your offer is for Oar_v3.1 in Ensembl ...
written 5 weeks ago by hosein_salehi60
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Comment: C: How I can find flanking regions
... Actually I want to design primers for QPCR, for some coordinates ( like: chr24:40902129-41709809, chr25:11035146-11097889 ). So ,the QPCR primers should be on the flanking , that is non-repetitive sequence inside . How can I select this regions? ...
written 5 weeks ago by hosein_salehi60
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How I can find QTLs regions for coordinates in sheep genome by shell
... I have some coordinates ( like: chr24:40902129-41709809, chr25:11035146-11097889) from Ovis aries:Oar_v4.0 file. How I can find QTLs regions for them by shell. Thanks ...
genome written 5 weeks ago by hosein_salehi60
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How I can find flanking regions
... I have sequences of some coordinates ( like: chr24:40902129-41709809, chr25:11035146-11097889) from oar_v4.0_27.fa file. How I can find flanking regions for them. Thanks ...
sequence written 5 weeks ago by hosein_salehi60 • updated 5 weeks ago by toralmanvar510
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How I can find sequences
... I have some coordinates ( like: chr24:40902129-41709809, chr25:11035146-11097889) from Ovis aries:Oar_v4.0 file. How I can find sequences for them. Thanks ...
sequence written 5 weeks ago by hosein_salehi60 • updated 5 weeks ago by toralmanvar510
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How I can find exones and pathway by shell or ...
... I have some coordinates ( like: chr24:40902129-41709809, chr25:11035146-11097889) and genes from Oar_v4.0.gtf (sheep) in this coordinates. How I can find exones and pathway. I need the fastest and newest methods by shell or .... Thanks. ...
genome written 7 weeks ago by hosein_salehi60 • updated 5 weeks ago by Biostar ♦♦ 20
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How I can change the fifth column of these rows
... I have many many rows (about 6000) from PennCNV software, icludes 7 columns , like these: chr10:70920533-70921956 numsnp=3 length=1,424 state1,cn=0 WDS1_1.adjusted startsnp=oar3_OAR10_70920533 endsnp=oar3_OAR10_70921956 chr15:2694950-2706055 numsnp=4 length=11, ...
genome written 7 weeks ago by hosein_salehi60 • updated 7 weeks ago by finswimmer4.4k

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