User: hosein_salehi6

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Posts by hosein_salehi6

<prev • 44 results • page 1 of 5 • next >
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Finding the number of coordinates
... Dear Biostar member I have two files(big) and each file has one column of coordinates in genome. I want to find the number of coordinates in second file which including in each coordinate of first file (The result should be two column, the first column include coordinates same as first file and seco ...
genome written 6 weeks ago by hosein_salehi60
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(Closed) Select number for each region
... Hello I have some regions in one column(.txt) such as : chr1:10041971-10153500 chr2:2644661-293334 chr2:32120816-32177000 chr20:27254237-27374800 chr10:706059-1034630 chr3:215840607-215890726 chr5:4353812-4477220 Also I have a ...
genome written 5 months ago by hosein_salehi60 • updated 5 months ago by RamRS22k
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Comment: C: Merging Overlaping regions
... Hi, I did, But there is error, again : The first run:replace sortBed with sort-bed cat ss661pp.txt ss415pp.txt \ | awk -vFS="\t" -vOFS="\t" '{print $1,$2";"$3}' \ | awk -vFS="\t" -vOFS="\t" '{gsub(/[:-]/,"\t",$1)}1' \ | sort-bed | mergeBed -c 4 -o collapse -d ...
written 7 months ago by hosein_salehi60 • updated 7 months ago by h.mon26k
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Comment: C: Merging Overlaping regions
... Dear h.mon Hello I'm very grateful for your time. I've tried the last code but it does not work. It has these errors: >/home/software/bin/sortBed: line 2: 18121 Bus error (core dumped) ${0%/*}/bedtools sort "$@" >/home/software/bin/mergeBed: line 2: 18120 Bus error ...
written 7 months ago by hosein_salehi60 • updated 7 months ago by h.mon26k
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Comment: C: Merging Overlaping regions
... I would be thankful for your time , Your suggestion is Ok. If I have 3 columns in each file? Actually I want to merge based on first column(regions), for example: File 1: Regions Genes Animals chr1:100109327-100162088 BTG3 TRNAC-GCA ROBO1 FKD18 SUM3 ...
written 7 months ago by hosein_salehi60 • updated 7 months ago by h.mon26k
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Merging Overlaping regions
... Hello I have two files and each file has one column, for example: File 1:600rows, Like: chr1:100109327-100162088 chr1:103728175-103796914 chr2:103908343-104007674 chr5:104660686-104731626 chr11:216500833-216575408 chr12:218 ...
genome written 7 months ago by hosein_salehi60 • updated 7 months ago by Alex Reynolds28k
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Comment: C: Desegregation of animals and locations
... Thanks for your attention ...
written 9 months ago by hosein_salehi60
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Comment: C: Desegregation of animals and locations
... Thanks for your attention. ...
written 9 months ago by hosein_salehi60
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Comment: C: Desegregation of animals and locations
... Yes, of course. You are right. ...
written 9 months ago by hosein_salehi60
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Desegregation of animals and locations
... Hi . I have a .txt file (660 rows) like this : Locations Animals chr1:10934871-10991498 MAZ4 DLS5 AFS33 chr1:113630180-113698152 AL108 BDP358 MFW157 MFW160 MAZ4 chr1:131662885-131770719 MAZ4 chr1:133496547-133547227 FINN306 MAZ4 chr1 ...
genome written 9 months ago by hosein_salehi60 • updated 9 months ago by ATpoint18k

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