User: hosein_salehi6

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Posts by hosein_salehi6

<prev • 42 results • page 1 of 5 • next >
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Comment: C: Merging Overlaping regions
... Hi, I did, But there is error, again : The first run:replace sortBed with sort-bed cat ss661pp.txt ss415pp.txt \ | awk -vFS="\t" -vOFS="\t" '{print $1,$2";"$3}' \ | awk -vFS="\t" -vOFS="\t" '{gsub(/[:-]/,"\t",$1)}1' \ | sort-bed | mergeBed -c 4 -o collapse -d ...
written 10 weeks ago by hosein_salehi60 • updated 10 weeks ago by h.mon22k
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Comment: C: Merging Overlaping regions
... Dear h.mon Hello I'm very grateful for your time. I've tried the last code but it does not work. It has these errors: >/home/software/bin/sortBed: line 2: 18121 Bus error (core dumped) ${0%/*}/bedtools sort "$@" >/home/software/bin/mergeBed: line 2: 18120 Bus error ...
written 10 weeks ago by hosein_salehi60 • updated 10 weeks ago by h.mon22k
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Comment: C: Merging Overlaping regions
... I would be thankful for your time , Your suggestion is Ok. If I have 3 columns in each file? Actually I want to merge based on first column(regions), for example: File 1: Regions Genes Animals chr1:100109327-100162088 BTG3 TRNAC-GCA ROBO1 FKD18 SUM3 ...
written 10 weeks ago by hosein_salehi60 • updated 10 weeks ago by h.mon22k
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Merging Overlaping regions
... Hello I have two files and each file has one column, for example: File 1:600rows, Like: chr1:100109327-100162088 chr1:103728175-103796914 chr2:103908343-104007674 chr5:104660686-104731626 chr11:216500833-216575408 chr12:218 ...
genome written 10 weeks ago by hosein_salehi60 • updated 10 weeks ago by Alex Reynolds27k
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Comment: C: Desegregation of animals and locations
... Thanks for your attention ...
written 3 months ago by hosein_salehi60
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Comment: C: Desegregation of animals and locations
... Thanks for your attention. ...
written 3 months ago by hosein_salehi60
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Comment: C: Desegregation of animals and locations
... Yes, of course. You are right. ...
written 3 months ago by hosein_salehi60
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Desegregation of animals and locations
... Hi . I have a .txt file (660 rows) like this : Locations Animals chr1:10934871-10991498 MAZ4 DLS5 AFS33 chr1:113630180-113698152 AL108 BDP358 MFW157 MFW160 MAZ4 chr1:131662885-131770719 MAZ4 chr1:133496547-133547227 FINN306 MAZ4 chr1 ...
genome written 3 months ago by hosein_salehi60 • updated 3 months ago by ATpoint12k
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Comment: C: I need to find the flanking region
... Thanks for answer, Actuallly I have some coordinates (like: chr5:83033623-83213540, chr6:116440663-116774122, chr9:66226352-66300177). I have to design primers for further quantitative real-time PCR (QPCR) confirmation, about these coordinates .QPCR primers need to be on the flanking region. can you ...
written 4 months ago by hosein_salehi60
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(Closed) I need to find the flanking region
... Hi, I have some coordinates (like: chr5:83033623-83213540, chr6:116440663-116774122, chr9:66226352-66300177) I need to find the **flanking region** that is inside the these Regions.Please help me,Thanks. ...
sequence written 4 months ago by hosein_salehi60

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