User: hosein_salehi6

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Posts by hosein_salehi6

<prev • 64 results • page 1 of 7 • next >
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Errors in "primer premier 5"
... Hi there, Actually before I used "primer premier 5" for design primers ,It's worked very well, I just transferred the software into another laptop but I'm receiving this error for several times: "This function is not available in the demo" So I can not transfer a sequence or fasta format in the so ...
software error written 29 days ago by hosein_salehi60 • updated 29 days ago by ATpoint44k
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Comment: C: Design a matrix from a list with use of R or linux
... Sorry, previously I got this error > mydat=read.table(file.choose()) > df <- read.table("list.txt", sep="\t", header=TRUE, stringsAsFactors=FALSE) Error in file(file, "rt") : cannot open the connection In addition: Warning message: In file(file, "rt") : cannot ope ...
written 6 weeks ago by hosein_salehi60
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Comment: C: Design a matrix from a list with use of R or linux
... > mydat=read.table(file.choose()) > df <- read.table("list.txt", sep="\t", header=TRUE, stringsAsFactors=FALSE) Error in file(file, "rt") : cannot open the connection In addition: Warning message: In file(file, "rt") : cannot open file 'list.txt': No such file or d ...
written 6 weeks ago by hosein_salehi60 • updated 6 weeks ago by _r_am32k
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Comment: C: Design a matrix from a list with use of R or linux
... I just follow this manual: "https://tidyr.tidyverse.org/reference/pivot_wider.html" as mentioned above, that is the exact code. I did not consider data frame. This is our input file: Coordinates Sample Values chr1:110238914-110324454 SampleB 1 chr1:110238914-110324454 ...
written 6 weeks ago by hosein_salehi60
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Comment: C: Design a matrix from a list with use of R or linux
... df <- tidyr::pivot_wider(df, names_from="Sample", values_from="Values", values_fill = 2) ...
written 6 weeks ago by hosein_salehi60 • updated 6 weeks ago by _r_am32k
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Comment: C: Design a matrix from a list with use of R or linux
... Sorry for subsequent messages, I'm receiving this error several times: Error in UseMethod("tbl_vars") : no applicable method for 'tbl_vars' applied to an object of class "function" ...
written 6 weeks ago by hosein_salehi60 • updated 6 weeks ago by _r_am32k
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Comment: C: Design a matrix from a list with use of R or linux
... `df <- tidyr::pivot_wider(df, names_from="Sample", values_from="Values", values_fill = 2)` Alright , I found it in the manual, anyway thanks all ...
written 7 weeks ago by hosein_salehi60 • updated 7 weeks ago by _r_am32k
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Comment: C: Design a matrix from a list with use of R or linux
... Thanks for giving me this information, how to put 2 for samples which does not have the coordinate? ...
written 7 weeks ago by hosein_salehi60
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Design a matrix from a list with use of R or linux
... Hello there, I have a list.txt (big file) contains 2000 samples and 18000 coordinates (same as below file 1). Coordinates Sample Values chr1:110238914-110324454 SampleB 1 chr1:110238914-110324454 SampleC 3 chr1:110238914-110324454 SampleD 1 chr5:655 ...
R written 7 weeks ago by hosein_salehi60 • updated 7 weeks ago by rpolicastro3.2k
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Comment: C: Phylogenetic tree for CNVs
... Yes, you are right, another sample that I did not bring has this CNV(chr15:8924153-8982938), sorry for subsequent messages, you mean for distinguish between deletions and duplications I should allocate one column infront of the all CNVs and also put numbers (such as 0 and 1 for Del or Dup respective ...
written 7 weeks ago by hosein_salehi60

Latest awards to hosein_salehi6

Popular Question 13 months ago, created a question with more than 1,000 views. For How I can find flanking regions
Popular Question 13 months ago, created a question with more than 1,000 views. For CNV , make GCtype. LRR. BAF files , again
Popular Question 14 months ago, created a question with more than 1,000 views. For CNV , make GCtype. LRR. BAF files , again

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