User: gavinband

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gavinband20
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Posts by gavinband

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Answer: A: Opening BGEN files in R
... This is an old question, but as of 2017 there's [an R package for this][1]. Best, g. [1]: http://bitbucket.org/gavinband/bgen/wiki/rbgen ...
written 22 months ago by gavinband20
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Answer: A: number of snps in the bgen file (snptest)
... Here are two other ways: 1: Using [qctool][1]: running `qctool -g myfile.bgen` [1] prints out a summary of the input data, including the number of variants and samples in the file. 2: Using [bgenix][2]: E.g. the command `bgenix -g myfile.bgen -incl-range 22:0- -list` would list all variants on ch ...
written 22 months ago by gavinband20

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