User: checkyodna

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checkyodna20
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Posts by checkyodna

<prev • 4 results • page 1 of 1 • next >
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deeptools bamCoverage error
... I am encountering a problem when trying to use deeptools (version 2.5.4) and I cannot find any help online. My aim is to convert a BAM file to a bigWig file to visualise tracks on UCSC genome browser. I am using the following command: bamCoverage -b Striatum_W2_UCSCindex.bam -o Striatum_W2.bw --nor ...
rna-seq written 5 months ago by checkyodna20 • updated 5 months ago by h.mon27k
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Comment: C: Remove mitochondrial reads from BAM files
... Hi, is there a way to remove all entries after chromosome Y? I am trying to do this in a bedgraph file but the same will suffice in a BAM file. Thanks in advance. ...
written 5 months ago by checkyodna20
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Comment: C: Difference Between Somatic And Germline Variant Calling?
... What do you mean by 'three bins: 0%, 50%, or 100%'? Thanks ...
written 16 months ago by checkyodna20
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Somatic vs Germline Variant Calling
... Hi, I was wondering what exactly is the difference between germline and somatic variant calling? Why is a tumor-normal study considered to be somatic? Can indels be picked up on germline or somatic samples? Thanks ...
variant calling somatic sequencing germline written 17 months ago by checkyodna20 • updated 17 months ago by RamRS23k

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Popular Question 16 months ago, created a question with more than 1,000 views. For Somatic vs Germline Variant Calling

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