User: Yujin Kim

gravatar for Yujin Kim
Yujin Kim10
Reputation:
10
Status:
New User
Location:
Nice, FRANCE
Last seen:
8 months ago
Joined:
2 years, 2 months ago
Email:
y********@hotmail.fr

Interested in bioinformatics since high school, i've taken on studying bioinformatics as soon as i was able to during my 3rd year of biology in the University of Nice.

Right now, i'm doing my internship in the Institute of Research on Cancer and Aging in Nice (IRCAN) working on silencers in the Simona SACCANI's team.

Posts by Yujin Kim

<prev • 5 results • page 1 of 1 • next >
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Comment: C: How to build a model
... At this step, i only have the fastq from the sequencing. I was hopping to use the FastQC reports to get an idea of the read quality. ...
written 8 months ago by Yujin Kim10
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Comment: C: How to build a model
... Yes, just the "obviously" bad samples need to be stopped from continuing processing while maybe adding a flag for ambiguous samples would be best allowing for human supervision. ...
written 8 months ago by Yujin Kim10
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Comment: C: How to build a model
... I work in a clinical environment as you guessed, so manual checking is not really a possibility. The aim of this check is to find really bad samples and not waste time analyzing them. Can I use a simple statistical test to get that? ...
written 8 months ago by Yujin Kim10
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How to build a model
... Hi, I'm writing a pipeline and i want to implement a check on the quality of the reads. Using FastQC, i got the basic statistical data (mean, quartiles etc...) from the "Per base sequence quality" tab and now i want to check if the quality of this sample's reads is sufficient to go on with the an ...
model statistics written 8 months ago by Yujin Kim10
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Answer: A: Intersect counts with fragment regions
... First of all, I believe you forgot the -wa and -wb options that create your final output. Second the chr1 7506 7512 346 coordonates don't intersect with any positions in your fragments_chr.bed file. So it won't appear in your output. ...
written 23 months ago by Yujin Kim10

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