User: Glory Basumata

Reputation:
10
Status:
New User
Location:
India/Guwahati/Indian Institute of Technology Guwahati
Last seen:
12 hours ago
Joined:
5 months, 3 weeks ago
Email:
g************@hotmail.com

Posts by Glory Basumata

<prev • 18 results • page 1 of 2 • next >
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Comment: C: How to convert NGS .tabular file to excel file?
... Thanks for sharing the paper. I'll add it to my knowledge and personal folder. ...
written 22 hours ago by Glory Basumata10
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Comment: C: How to convert NGS .tabular file to excel file?
... Hi swbarnes2, I tried opening it with excel but it just refuses to recognize the file extension .tabular. Howeve, this file type/extention could be imported in the program R and viewed. ...
written 1 day ago by Glory Basumata10
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Comment: A: How to convert NGS .tabular file to excel file?
... Hi All, Thank you for your responses to my question. I am sharing the DESeq2 result output file so that you could try opening it. I am trying to filter out top 10 to 50 genes which are either upregulated or downregulated for this file. **Link to file:** https://drive.google.com/file/d/1ItlSqE8jH64 ...
written 1 day ago by Glory Basumata10
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Comment: C: How to convert NGS .tabular file to excel file?
... Hi Paul, thanks for sharing the script. However, does it work with the format (.tabular)? Also how useful is this? ...
written 1 day ago by Glory Basumata10
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Comment: C: How to convert NGS .tabular file to excel file?
... Hi finswimmer, Thank you for the warning. I appreciate your concern. I understand that excel is not the right tool for NGS study. My main intention to open/visualize tabular file is to check the DESeq result and filter out the differentially expressed gene. I also want to filter out the top 10 or 2 ...
written 2 days ago by Glory Basumata10
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Comment: C: How to convert NGS .tabular file to excel file?
... Hi all, Thanks for the instructions. I will try this. @Pierre: I like the cartoon icon :) Will try opening the file in R instead. ...
written 2 days ago by Glory Basumata10
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How to convert NGS .tabular file to excel file?
... I am using Galaxy for the NGS analysis. When I use tools like featureCounts, DESeq, etc., it gives output file in .tabular format. I need to see this data in a well-organized table in Microsoft Excel (xlsx) format. Could anyone help, please? ...
format tabular galaxy excel rna-seq written 2 days ago by Glory Basumata10
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Comment: C: Running STAR aligner on paired-end reads as single-end read
... This beautifully crafted answer now clears my doubt altogether in relation to supply of read inputs into STAR or Hisat2. Thank you for your help. Appreciate it. ...
written 4 weeks ago by Glory Basumata10
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Comment: C: Running STAR aligner on paired-end reads as single-end read
... Hi h.mon, Thank you for the detailed explanation. I appreciate your help. Sorry for the late response, as I was doubtful when you mentioned that STAR does not have the option to align *forward* or *reverse* reads. So I have to take some time and do my research on it. What raised my doubt, initially, ...
written 4 weeks ago by Glory Basumata10
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Comment: C: Running STAR aligner on paired-end reads as single-end read
... Hi, h.mon, Thank you for your answer. When you say, run STAR two times, do you mean that I take one Fastq file and run it two times? First with Forward option followed by the Reverse alignment option? Thank you. ...
written 5 weeks ago by Glory Basumata10

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