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Comment: C: Get sequencing informations from NCBI with acc number
5.7 years ago by Chvatil ▴ 140
1
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4
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1.3k
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Get sequencing informations from NCBI with acc number
ncbi Assembly efetch
5.7 years ago by Chvatil ▴ 140
0
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1
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3.4k
views
Comment: C: Get distance matrix based on node tree
5.7 years ago by Chvatil ▴ 140
1
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3
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3.4k
views
Get distance matrix based on node tree
tree distance matrix phylogeny
updated 5.7 years ago by 22k • written 5.7 years ago by ▴ 140
0
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0
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941
views
Codon substitution model (codeml)
dnds codeml paml
updated 5.8 years ago by 20 • written 5.9 years ago by ▴ 140
0
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0
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1.8k
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Comment: C: Remove sequence by coordinates with Biopython
5.8 years ago by Chvatil ▴ 140
1
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4
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1.8k
views
Remove sequence by coordinates with Biopython
biopython fasta
5.8 years ago by Chvatil ▴ 140
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1
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1.8k
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Comment: C: Remove sequence by coordinates with Biopython
5.8 years ago by Chvatil ▴ 140
0
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1
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1.2k
views
Hisat2 --sra-acc option (redirect sra file to a desired directory)
hisat2 sra ncbi
5.9 years ago by Chvatil ▴ 140
1
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0
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54k
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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
5.9 years ago by Chvatil ▴ 140
0
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0
replies
2.9k
views
Comment: C: Access to SRA read from a specific genome assembly on NCBI
5.9 years ago by Chvatil ▴ 140
0
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0
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1.9k
views
Comment: C: Set the max coverage wanted with Hisat2 ?
5.9 years ago by Chvatil ▴ 140
3
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5
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1.9k
views
Set the max coverage wanted with Hisat2 ?
Hisat2 mapping
5.9 years ago by Chvatil ▴ 140
0
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1
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1.9k
views
Comment: C: Set the max coverage wanted with Hisat2 ?
5.9 years ago by Chvatil ▴ 140
0
votes
1
reply
2.9k
views
Comment: C: Access to SRA read from a specific genome assembly on NCBI
5.9 years ago by Chvatil ▴ 140
0
votes
1
reply
2.9k
views
Comment: C: Access to SRA read from a specific genome assembly on NCBI
5.9 years ago by Chvatil ▴ 140
0
votes
1
reply
2.9k
views
Comment: C: Access to SRA read from a specific genome assembly on NCBI
5.9 years ago by Chvatil ▴ 140
0
votes
1
reply
2.9k
views
Comment: C: Access to SRA read from a specific genome assembly on NCBI
5.9 years ago by Chvatil ▴ 140
3
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10
replies
2.9k
views
Access to SRA read from a specific genome assembly on NCBI
ncbi Assembly reads
5.9 years ago by Chvatil ▴ 140
0
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0
replies
1.8k
views
Comment: C: Use esearch on python to get nucleotide sequence from the protein ses id
6.0 years ago by Chvatil ▴ 140
0
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1
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1.8k
views
Comment: C: Use esearch on python to get nucleotide sequence from the protein ses id
6.0 years ago by Chvatil ▴ 140
1
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4
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1.8k
views
Use esearch on python to get nucleotide sequence from the protein ses id
esearch python entrez
6.0 years ago by Chvatil ▴ 140
0
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0
replies
1.1k
views
Get pvalue and/or confidence interval of dN/dS from the codeml output
python dNdS
6.0 years ago by Chvatil ▴ 140
0
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2
replies
996
views
Recover from protein ID the corresponding nucleotide ID .
fasta python ncbi
updated 6.1 years ago by ▴ 650 • written 6.1 years ago by ▴ 140
1
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0
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2.1k
views
Comment: C: Count number of monophyletic groups within pylogeny
6.6 years ago by Chvatil ▴ 140
4
votes
2
replies
2.1k
views
Count number of monophyletic groups within pylogeny
phylogeny monophyletic
updated 6.6 years ago by 22k • written 6.6 years ago by ▴ 140
0
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0
replies
1.1k
views
What kind of protein matrix substitution use for blastX divergent sequences
blast diamond homology matrix
6.8 years ago by Chvatil ▴ 140
0
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1
reply
5.4k
views
Comment: C: output path issue on Busco (python)
6.8 years ago by Chvatil ▴ 140
0
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1
reply
5.4k
views
Comment: C: output path issue on Busco (python)
6.8 years ago by Chvatil ▴ 140
0
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2
replies
9.9k
views
Comment: A: Recover fasta sequences in database from the blast output 6
6.8 years ago by Chvatil ▴ 140
6
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23
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9.9k
views
Recover fasta sequences in database from the blast output 6
blast output fasta
6.8 years ago by Chvatil ▴ 140
0
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0
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9.9k
views
Comment: C: Recover fasta sequences in database from the blast output 6
6.8 years ago by Chvatil ▴ 140
0
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1
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9.9k
views
Comment: C: Recover fasta sequences in database from the blast output 6
6.8 years ago by Chvatil ▴ 140
0
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2
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9.9k
views
Comment: C: Recover fasta sequences in database from the blast output 6
6.8 years ago by Chvatil ▴ 140
0
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1
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9.9k
views
Comment: C: Recover fasta sequences in database from the blast output 6
6.8 years ago by Chvatil ▴ 140
0
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16
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6.0k
views
Issue using MaSuRCA-3.2.6
Assembly assembler
updated 7.2 years ago by 20 • written 7.4 years ago by ▴ 140
0
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10
replies
3.6k
views
No output nr file after running makedb
blast diamond makedb
updated 7.3 years ago by 20 • written 7.5 years ago by ▴ 140
0
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0
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4.6k
views
Comment: C: De novo assembly programm
7.4 years ago by Chvatil ▴ 140
8
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22
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4.6k
views
6 follow
De novo assembly programm
assembly
7.4 years ago by Chvatil ▴ 140
0
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0
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4.6k
views
Comment: C: De novo assembly programm
7.4 years ago by Chvatil ▴ 140
0
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1
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4.6k
views
Comment: C: De novo assembly programm
7.4 years ago by Chvatil ▴ 140
0
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1
reply
4.6k
views
Comment: C: De novo assembly programm
7.4 years ago by Chvatil ▴ 140
0
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2
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4.6k
views
Comment: C: De novo assembly programm
7.4 years ago by Chvatil ▴ 140
0
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0
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4.6k
views
Comment: C: De novo assembly programm
7.4 years ago by Chvatil ▴ 140
0
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2
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4.6k
views
Comment: C: De novo assembly programm
7.4 years ago by Chvatil ▴ 140
0
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1
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4.6k
views
Comment: C: De novo assembly programm
7.4 years ago by Chvatil ▴ 140
0
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1
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6.0k
views
Comment: C: Issue using MaSuRCA-3.2.6
7.4 years ago by Chvatil ▴ 140
0
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1
reply
6.0k
views
Comment: C: Issue using MaSuRCA-3.2.6
7.4 years ago by Chvatil ▴ 140
0
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1
reply
6.0k
views
Comment: C: Issue using MaSuRCA-3.2.6
7.4 years ago by Chvatil ▴ 140
0
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1
reply
6.0k
views
Comment: C: Issue using MaSuRCA-3.2.6
7.4 years ago by Chvatil ▴ 140
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