User: 2012secondseason

Reputation:
20
Status:
New User
Location:
Last seen:
1 year, 4 months ago
Joined:
1 year, 7 months ago
Email:
2***************@gmail.com

Posts by 2012secondseason

<prev • 22 results • page 1 of 3 • next >
0
votes
2
answers
570
views
2
answers
Comment: C: Difference between 'intergenic' and 'ncRNA' in annotation.
... Thank you for answer. But still confused. 'intergenic region means intron? And of course it doesn't code protein?? What's functional difference with intron?? ...
written 18 months ago by 2012secondseason20
8
votes
2
answers
570
views
2
answers
Difference between 'intergenic' and 'ncRNA' in annotation.
... Hi all. I am confused about the concept of 'Intergenic' region in annotation. What's difference between ncRNA? ncRNA means only 'long' non-coding rna? Thanks in advance. ...
annotation ncrna intergenic annovar written 18 months ago by 2012secondseason20 • updated 3 months ago by Biostar ♦♦ 20
8
votes
2
answers
996
views
2
answers
When Hard clipping is used instead of the Soft clipping ?
... Hi all. The documentation for Samtools is minimal at best. I'm still confused on the concept of a clipped read. I know that there are many explanations here that soft clipped bases are present in SEQ unlike hard clipped bases. But it's insufficient. In what cases, use H instead of S ?? Thanks. ...
clipping cigar hard clipping written 18 months ago by 2012secondseason20 • updated 18 months ago by Devon Ryan92k
0
votes
0
answers
844
views
0
answers
(Closed) In SAM format, what is SN:GL000212.1 ?
... Hello. Studying SAM format , I am anxious about 'GL' in Recerence suquence name field like this. @SQ SN:GL000207.1 LN:4262 @SQ SN:GL000226.1 LN:15008 @SQ SN:GL000229.1 LN:19913 @SQ SN:GL000231.1 LN:27386 @SQ SN:GL000210.1 LN:27682 @SQ SN:GL000239.1 LN:33824 @SQ ...
reference samformat written 19 months ago by 2012secondseason20
0
votes
0
answers
369
views
0
answers
(Closed) What is the relation between contig and reference sequence in VCF format?
... As far as I know, Contig is a combination of continuous & overlapping reads. But in description of VCF format, there is a URL of reference in Contig field like this. 1.2.7 Contig field format As with chromosomal sequences it is highly recommended (but not required) that the header include tags ...
contig reference written 19 months ago by 2012secondseason20
0
votes
1
answer
600
views
1
answers
Comment: C: What is URL of Contig in VCF format?
... Thanks. But why is reference sequence's url there?? What is the relation between contig and reference sequence? ...
written 19 months ago by 2012secondseason20
6
votes
1
answer
600
views
1
answer
What is URL of Contig in VCF format?
... Hi.. I am very confused with contig's url. I know that contig means combination of sample's continuing & overlapping regional reads, but why 'URL' is in Contig's field? That url means what? 1.2.7 Contig field format As with chromosomal sequences it is highly recommended (but not required ...
contig written 19 months ago by 2012secondseason20 • updated 19 months ago by RamRS24k
0
votes
1
answer
640
views
1
answer
(Closed) How To Interpret contig field Fields In Vcf Files From 1000 Genomes?
... Hello. There are 3 contigs about chromosome 1 in a 1000 genome indels vcf file.(1000G_phase1.indels.hg19.vcf) ##contig= ##contig= ##contig= I dont understand what 'assembly' exactly means. In fact, I don't fully understand how breakpoint are assembled. contig, breakpoint, indel, assembly. How th ...
vcf contig breakpoint written 19 months ago by 2012secondseason20 • updated 19 months ago by Pierre Lindenbaum124k
1
vote
0
answers
458
views
0
answers
How do we get VCF's ALT field values?
... Hi. When I use bcftools only with input BCF file, VCF file involving ALT filed values is created. I am wondering bcftools has autonomously informations for altarnatice alleles. Thanks. ...
vcf alt bcftools written 19 months ago by 2012secondseason20
0
votes
1
answer
730
views
1
answers
Comment: C: What's 1000 Genome indel calls??
... Nice explanation. Thank you very much! ...
written 19 months ago by 2012secondseason20

Latest awards to 2012secondseason

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1776 users visited in the last hour