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Showing :
questions
28
votes
14
replies
30k
views
10 follow
Number Of Reads In A Sam File Which Are Assigned To Each Chromosome?
alignment
sam
updated 16 months ago by
Ram
43k • written 12.4 years ago by
KCC
★ 4.1k
8
votes
4
replies
8.2k
views
How Do I Overlay Tracks In Genomic Viewers Such As Igv Or Igb?
visualization
updated 3.8 years ago by
Malcolm.Cook
★ 1.5k • written 11.2 years ago by
KCC
★ 4.1k
15
votes
8
replies
21k
views
7 follow
Is There A Program For Viewing Bed Files And Wig Files?
bed
wiggle
updated 4.0 years ago by
mingchen720
• 0 • written 12.6 years ago by
KCC
★ 4.1k
2
votes
2
replies
2.2k
views
Correlation Between Tags On The Sense And Antisense Strand?
correlation
wiggle
updated 5.5 years ago by
Biostar
20 • written 11.9 years ago by
KCC
★ 4.1k
1
vote
2
replies
1.8k
views
Where Do I Get Runfiles For Specific Machines For Simngs?
updated 5.8 years ago by
dgpinheiro
• 0 • written 12.0 years ago by
KCC
★ 4.1k
10
votes
1
reply
4.7k
views
Two Fastq Files And Alignment With Bwa.
bwa
sam
alignment
fastq
updated 6.0 years ago by
Biostar
20 • written 12.4 years ago by
KCC
★ 4.1k
3
votes
3
replies
2.2k
views
Keeping Tags That Are Mapped To The Same Place By Two Aligners
alignment
bwa
bowtie
updated 6.8 years ago by
Biostar
20 • written 11.3 years ago by
KCC
★ 4.1k
2
votes
1
reply
1.8k
views
The Role Of Alignment In Processing Sequencing Data
alignment
updated 7.9 years ago by
Biostar
20 • written 12.4 years ago by
KCC
★ 4.1k
4
votes
1
reply
2.3k
views
What Is 'Read Length' In The Context Of Simlibrary?
updated 8.5 years ago by
Biostar
20 • written 11.4 years ago by
KCC
★ 4.1k
1
vote
1
reply
1.7k
views
Where Can I Find Wigencode?
wiggle
updated 8.7 years ago by
Biostar
20 • written 12.4 years ago by
KCC
★ 4.1k
3
votes
6
replies
2.6k
views
A Question About Translating Transcript-Based Microarray Data Into Gene-Based Microarray Data
microarray
updated 9.2 years ago by
Biostar
20 • written 11.0 years ago by
KCC
★ 4.1k
5
votes
1
reply
5.4k
views
Where Does The Correlation Within And Between Strands In A Dna-Seq Experiment Come From?
correlation
updated 9.6 years ago by
Biostar
20 • written 11.4 years ago by
KCC
★ 4.1k
1
vote
4
replies
3.5k
views
How Do I Convert From Sam To Eland Format?
sam
updated 9.7 years ago by
geneart$$
▴ 50 • written 12.0 years ago by
KCC
★ 4.1k
3
votes
4
replies
3.1k
views
If A Read Is Clipped, What Is The Preferred Way To Make Tag Counts?
genome-coverage
sam
updated 21 months ago by
Ram
43k • written 11.1 years ago by
KCC
★ 4.1k
13
votes
4
replies
4.6k
views
Is There A Tool For Converting A Fixed Step Wig To A Variable Step Wig?
wiggle
updated 10.2 years ago by
choza78
• 0 • written 12.4 years ago by
KCC
★ 4.1k
27
votes
6
replies
7.3k
views
How Do You Decide When A Sequencing Run Is Too Bad To Have Reliable Information?
chip-seq
updated 10.2 years ago by
Biostar
20 • written 10.9 years ago by
KCC
★ 4.1k
13
votes
5
replies
6.3k
views
A Call For Clear Information On How To Use F-Seq For Faire-Seq
updated 10.6 years ago by
Biostar
20 • written 11.0 years ago by
KCC
★ 4.1k
1
vote
3
replies
2.8k
views
How Do You Get Tag Counts From Paired-End Reads?
paired
genome
coverage
updated 10.7 years ago by
Istvan Albert
100k • written 10.7 years ago by
KCC
★ 4.1k
2
votes
4
replies
3.0k
views
Pooling Replicates With Different Read Lengths
chip-seq
replicates
updated 10.7 years ago by
matted
7.8k • written 10.7 years ago by
KCC
★ 4.1k
2
votes
6
replies
3.8k
views
Rating The Affinity Of A Transciption Factor For A Region Of Dna
motif
updated 10.8 years ago by
Pierre Lindenbaum
160k • written 10.8 years ago by
KCC
★ 4.1k
2
votes
1
reply
1.7k
views
Is There A Name For Chip-Seq Peaks That Occur Just After The Stop Codon Of A Gene?
peak-calling
chip-seq
10.8 years ago by
KCC
★ 4.1k
10
votes
3
replies
8.4k
views
A Way To Get Dna Sequence From Specific Coordinates Using An Online Service
sequence
extraction
updated 10.9 years ago by
Pierre Lindenbaum
160k • written 10.9 years ago by
KCC
★ 4.1k
9
votes
3
replies
4.0k
views
Are Some Sequences Uniquely Mapped By Bwa When Mapped As Paired-End That Would Not Be When Mapped As Single-End?
bwa
updated 10.9 years ago by
lh3
33k • written 10.9 years ago by
KCC
★ 4.1k
7
votes
5
replies
4.9k
views
Please Help Me Check My Workflow For Paired-End Sequencing
bwa
picard
samtools
workflow
updated 10.9 years ago by
Pablo Marin-Garcia
★ 2.0k • written 10.9 years ago by
KCC
★ 4.1k
8
votes
1
reply
4.4k
views
Is There An Elegant Way To Extract Only The Properly-Paired Reads In A Sam/Bam File?
paired-end
samtools
updated 10.9 years ago by
Ashutosh Pandey
12k • written 10.9 years ago by
KCC
★ 4.1k
2
votes
4
replies
2.3k
views
I Have Two Lists Of Peaks And I Want To See If They Are Associated With Different Go Terms
go
peak-calling
updated 10.9 years ago by
14134125465346445
★ 3.6k • written 10.9 years ago by
KCC
★ 4.1k
4
votes
1
reply
2.7k
views
Comparing Peaks Coming From Different Peak Calling Programs
peak-calling
peak-calling
updated 11.0 years ago by
Stephen
2.8k • written 11.0 years ago by
KCC
★ 4.1k
1
vote
3
replies
1.9k
views
Is There A Simple Algorithm For Translating Cosmid Transcript Names To Cosmid Gene Names?
gene
11.0 years ago by
KCC
★ 4.1k
8
votes
6
replies
8.9k
views
Locating A Sequence In A Fasta File.
fasta
updated 11.0 years ago by
SES
8.6k • written 11.0 years ago by
KCC
★ 4.1k
1
vote
5
replies
3.9k
views
Meaning Of Hits As It Relates To The X0 Tag And Bwa
bwa
alignment
11.1 years ago by
KCC
★ 4.1k
7
votes
3
replies
2.5k
views
Is There An Easy And Automated Way To Resolve Gene Names Into A Consistent Naming System?
gene
updated 11.1 years ago by
Damian Kao
16k • written 11.1 years ago by
KCC
★ 4.1k
0
votes
9
replies
4.1k
views
I Have A Problem Using The Gem Mapper To Calculate Mappability. It Dies After All The Mapping Is Done.
alignment
11.1 years ago by
KCC
★ 4.1k
11
votes
8
replies
9.2k
views
Manipulating Wiggle Files
wiggle
bed
updated 11.1 years ago by
sjneph
▴ 690 • written 12.4 years ago by
KCC
★ 4.1k
11
votes
6
replies
3.2k
views
Viewing Non-Standard Genomes
visualization
updated 11.2 years ago by
deanna.church
★ 1.1k • written 11.2 years ago by
KCC
★ 4.1k
0
votes
7
replies
2.6k
views
What Do I Need To Know About My Microarray Experiment In Order To Do Normalization On It?
microarray
11.2 years ago by
KCC
★ 4.1k
6
votes
2
replies
3.2k
views
Liftover Of An Entire Genome
liftover
updated 11.3 years ago by
Pierre Lindenbaum
160k • written 11.3 years ago by
KCC
★ 4.1k
5
votes
4
replies
1.9k
views
Dna-Seq Multiple Mapped Tags
updated 11.3 years ago by
Fidel
★ 2.0k • written 11.3 years ago by
KCC
★ 4.1k
10
votes
9
replies
9.5k
views
Duplicates In The Context Of Deep Sequencing
sequencing
duplicates
updated 11.3 years ago by
lh3
33k • written 11.3 years ago by
KCC
★ 4.1k
73
votes
7
replies
13k
views
6 follow
What Should I Use Blat For?
alignment
updated 11.3 years ago by
David Quigley
11k • written 11.3 years ago by
KCC
★ 4.1k
5
votes
12
replies
6.5k
views
How Do I Detect Multiple Mappings For A Single Read?
sam
updated 11.4 years ago by
David Langenberger
11k • written 11.4 years ago by
KCC
★ 4.1k
3
votes
1
reply
2.6k
views
How Do I Interpret The Pos In The Alternative Hits Format?
sam
updated 11.7 years ago by
matted
7.8k • written 11.7 years ago by
KCC
★ 4.1k
2
votes
2
replies
2.2k
views
How Do I View Multiple Numeric Genomic Data Files In The Same Plot?
bed
wiggle
plot
updated 11.7 years ago by
Alex Reynolds
35k • written 11.7 years ago by
KCC
★ 4.1k
4
votes
2
replies
4.2k
views
Where Is The Tss Of A Gene Located In A Bed File?
bed
updated 11.7 years ago by
seidel
11k • written 11.7 years ago by
KCC
★ 4.1k
4
votes
2
replies
4.3k
views
How Do I Figure Out What Parameters To Use For Bwa
bwa
11.8 years ago by
KCC
★ 4.1k
3
votes
5
replies
3.6k
views
How Many Mismatches For Fastx Barcode Splitter?
fastx
updated 11.8 years ago by
Arun
2.4k • written 11.8 years ago by
KCC
★ 4.1k
3
votes
4
replies
3.5k
views
How Do I Read A Maf File From File Into Pygr
updated 11.9 years ago by
Philipp Bayer
8.3k • written 11.9 years ago by
KCC
★ 4.1k
7
votes
5
replies
5.3k
views
Finding Mappability With Peakseq
updated 24 months ago by
Ram
43k • written 12.0 years ago by
KCC
★ 4.1k
8
votes
5
replies
3.9k
views
Bed File Of Reads To Wiggle File Of Numbers Of Features At Each Position
wiggle
bed
updated 12.0 years ago by
brentp
24k • written 12.0 years ago by
KCC
★ 4.1k
0
votes
1
reply
2.3k
views
Looking For Rankings From Critical Assessment Of Prediction Of Interactions
docking
protein
12.0 years ago by
KCC
★ 4.1k
5
votes
5
replies
2.7k
views
What Nucleosome Positioning Software Do You Use?
updated 12.1 years ago by
Ian
6.0k • written 12.1 years ago by
KCC
★ 4.1k
58 results • Page
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