User: Yu

gravatar for Yu
Yu110
Reputation:
110
Status:
Trusted
Location:
China
Last seen:
3 weeks, 3 days ago
Joined:
8 years, 7 months ago
Email:
y*******@gmail.com

about me

Posts by Yu

<prev • 30 results • page 1 of 3 • next >
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Comment: C: How To Merge Isoforms For A Gene
... Just a note here, this script doesn't work for the scenario that the same gene name locates on different chromosomes (eg ChrX and ChrY). ...
written 4 weeks ago by Yu110
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Comment: C: ClinVar and HGVS variant (insertion) definition for protein sequence
... Thank you for your comment, I guess so. I sent an email to VarNomen @ HGVS.org, they told me they think my description is correct, that of ClinVar is incorrect. ...
written 13 months ago by Yu110
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ClinVar and HGVS variant (insertion) definition for protein sequence
... Dear All, Recently, I find that the variant p.HGVS of ClinVar annotation may different from the HGVS Nomenclature suggestion, according to the ClinVar website description, it should follow the HGVS representations. I am not sure if my understanding of ClinVar and HGVS Nomenclature is corrected, so ...
hgvs protein clinvar variant insertion written 13 months ago by Yu110
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Comment: C: sliding windows with or without overlap?
... Thank you. Sliding windows may provide more resolution. ...
written 3.4 years ago by Yu110
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Comment: C: Confused with Ensembl Exon ID, How to understand them?
... first "1" on every column is name of the chromosome ( chromosome 1 ). exon_version: The stable identifier version for this exon. you can find gtf format detail from: ftp://ftp.ensembl.org/pub/release-81/gtf/homo_sapiens/README ...
written 3.5 years ago by Yu110
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sliding windows with or without overlap?
... Dear all, I am confused about sliding window method, we often using this method to analysis ChIP-seq data or Copy number variation(CNV). Sliding windows w/o overlap is divided genome into several equal segments, it often used in CNV analysis. Sliding windows w/ overlap is like [moving average in s ...
chip-seq sliding windows cnv written 4.6 years ago by Yu110 • updated 4.6 years ago by Ibrahim Tanyalcin1.1k
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Comment: C: question about macs2 --broad-cutoff
... Thanks a lot ! Using `q-value` can filer out `-log10(qvalue) <2` peaks successfully. ...
written 4.7 years ago by Yu110
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Comment: C: question about macs2 --broad-cutoff
... I think you didn't get my point. My question is how to set `-q` `-p` or `--broad-cutoff` to filter out `-log10(qvalue) <2` in my post example above. My post is ask why my result didn't filter out `-log10(qvalue) <2`, the options used are in the result file. Thanks for your support. ...
written 4.7 years ago by Yu110
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Comment: C: question about macs2 --broad-cutoff
... Thanks. Can you give me some example, how to set the q-value, p-value and broad-cutoff, then I can filter out -log10(qvalue) <2 in my result list? ...
written 4.7 years ago by Yu110
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question about macs2 --broad-cutoff
... Dear all, I am confused with the --broad-cutoff option in macs2. In the manual, it said that --broad-cutoff is cutoff for broad region. This option is not available unless --broad is set. If -p is set, this is a pvalue cutoff, otherwise, it's a qvalue cutoff. DEFAULT: 0.1 If I understand it correc ...
macs2 broadpeak broad-cutoff chip-seq written 4.7 years ago by Yu110 • updated 4.7 years ago by ivivek_ngs5.0k

Latest awards to Yu

Great Question 7 weeks ago, created a question with more than 5,000 views. For question about macs2 --broad-cutoff
Great Question 2.1 years ago, created a question with more than 5,000 views. For Gatk Vcf File To Consensus Sequence Use Vcfutils.Pl
Great Question 2.5 years ago, created a question with more than 5,000 views. For Gatk Vcf File To Consensus Sequence Use Vcfutils.Pl
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Confused with Ensembl Exon ID, How to understand them?
Popular Question 3.6 years ago, created a question with more than 1,000 views. For Is Any Database Provide Human Genes' Conservation Scores ?
Popular Question 3.7 years ago, created a question with more than 1,000 views. For Is Any Database Provide Human Genes' Conservation Scores ?
Popular Question 3.8 years ago, created a question with more than 1,000 views. For Is Any Database Provide Human Genes' Conservation Scores ?
Popular Question 4.9 years ago, created a question with more than 1,000 views. For Gatk Vcf File To Consensus Sequence Use Vcfutils.Pl
Supporter 5.0 years ago, voted at least 25 times.
Popular Question 6.4 years ago, created a question with more than 1,000 views. For Is Any Database Provide Human Genes' Conservation Scores ?
Popular Question 6.4 years ago, created a question with more than 1,000 views. For Gatk Vcf File To Consensus Sequence Use Vcfutils.Pl
Popular Question 7.3 years ago, created a question with more than 1,000 views. For Gatk Vcf File To Consensus Sequence Use Vcfutils.Pl
Student 7.3 years ago, asked a question with at least 3 up-votes. For Is Any Database Provide Human Genes' Conservation Scores ?

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