User: Wayne Lee

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Wayne Lee10
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8 months ago
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1 year, 5 months ago
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Posts by Wayne Lee

<prev • 11 results • page 1 of 2 • next >
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Comment: C: How to match gene name of two dataset with different annotation version ?
... For instance, there have two gene expression datasets, the row represent each gene and the column is sample, now I want to merge this two datasets according to the row. As they use different gene annotation version, result in there have some rows mismatch, i.e. some gene name in dataset 1 not be con ...
written 11 months ago by Wayne Lee10
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How to match gene name of two dataset with different annotation version ?
... Hello everyone! If I have two gene expression dataset with different gene annotation version, how to match gene name between this two dataset? Thanks, Wayne ...
gene annotation rna-seq written 11 months ago by Wayne Lee10 • updated 11 months ago by h.mon27k
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How to pick the threshold of segment mean values in copy number variation data?
... Hello, everyone! The segment_mean in copy number variation data of TCGA describe the log-transform copy number value of specific chromosome segment. I want to know how to pick the threshold to select abnormal fragments? Thanks, Wayne ...
tcga cnv written 11 months ago by Wayne Lee10
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Comment: C: How to transform DNA Methylation data in TCGA to effect of methylation on gene e
... Vary thanks, Kevin! Your answer helped me a lot. ...
written 12 months ago by Wayne Lee10
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Comment: C: How to transform DNA Methylation data in TCGA to effect of methylation on gene e
... Hi, Kevin, Thanks for your reply! I really need this information to do some analysis. Can I use the pipeline described on [this web page][1] to do this thing? Weather it is better than those summarisation functions? Thanks! Wayne [1]: https://confluence.broadinstitute.org/display/GDAC/Methyl ...
written 12 months ago by Wayne Lee10
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Comment: C: How To Compare Gene Expression And Methylation Level Of A Gene
... Hey, there! Do you have find any method to do this jod? Recently, I also met the same problem. Thanks a lot! Wayne ...
written 13 months ago by Wayne Lee10
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How to transform DNA Methylation data in TCGA to effect of methylation on gene expression
... Hello everyone! DNA methylation data in TCGA describe the methylation extent of single site and corresponding effected genes, but I want to transform it to extent of specific gene effected by all of methylation site. For instance, there have one gene and it could be regulate by 5 methylation sites ...
dna mathylation tcga written 13 months ago by Wayne Lee10 • updated 13 months ago by Kevin Blighe48k
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Comment: C: How to remove the RIN (RNA integrity number) effect for RNA-seq data?
... THX, it's helpful !! ...
written 16 months ago by Wayne Lee10
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Comment: C: How to remove the RIN (RNA integrity number) effect for RNA-seq data?
... Thank you answer this simple questure! But, I don't quite understand what your mean. Can you tell me more details? Or can you supply me some material or papers about this? thank you! ...
written 16 months ago by Wayne Lee10
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How to remove the RIN (RNA integrity number) effect for RNA-seq data?
... Holle everyone! I am a beginner in RNA-seq data analysis. In my recently work, I face a problem: my RNA-seq data has significant correlation with sample's RIN (RNA integrity number), and I want to remove this effect. Some papers indicate that one can use a linear model to normalize this technical co ...
normalization rna-seq written 16 months ago by Wayne Lee10 • updated 16 months ago by Michele Busby2.1k

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