User: shuksi1984
shuksi1984 • 60
- Reputation:
- 60
- Status:
- New User
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- Last seen:
- 1 year, 10 months ago
- Joined:
- 2 years, 9 months ago
- Email:
- s*********@gmail.com
Posts by shuksi1984
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... I want to build metagenomics pipeline. To start with, need raw data. How to identify and get raw data for
bacterial taxaonomy, phylogenetic analysis, and resistance gene identification? I believe for taxonomic classification and phylogenetic analysis, the raw data will have reads from multiple bact ...
written 23 months ago by
shuksi1984 • 60
• updated
23 months ago by
5heikki ♦ 9.1k
1
vote
1
answer
719
views
1
answers
... Why should a person choose bioinformatics as a carrer?
What is so exciting about the course?
Why are we exploring genomics?
How can a Bioinformatics scientist help us in day to day life? (Maybe we can elaborate bioinfo in healthcare)
...
written 2.0 years ago by
shuksi1984 • 60
0
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568
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Comment:
C: chatbot for genomics
... How about using IBM assistant??? ...
written 2.1 years ago by
shuksi1984 • 60
0
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568
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Comment:
C: chatbot for genomics
... Educate people about genomics. ...
written 2.1 years ago by
shuksi1984 • 60
1
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0
answers
568
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... How to get started to create a chatbot for genomics? Kindly, share the links or websites or idea to get started on it. I am NGS data analyst with the knowledge of bioinformatics, linux, and Python. Also, let me know the importance of machine learning in genomics. ...
written 2.1 years ago by
shuksi1984 • 60
0
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7
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74k
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7
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... I think, now UCSC browser has changed. Even I have the same query, but unable to fetch FASTA sequence using the coordinates. Can u explain using the given link..
https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=703655381_NWHqxkgVDaPPscUhaKxyA9bAbb7e ...
written 2.1 years ago by
shuksi1984 • 60
0
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0
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1.1k
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0
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Comment:
C: Biopython for NGS
... While browsing, I also came across Ruffus. How about Ruffus? Which one would be better sankemake or Ruffus? Although, both are python library but there must be some difference ...
written 2.2 years ago by
shuksi1984 • 60
4
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1.1k
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... Can I use Biopython to automate the NGS pipeline. If yes, which Biopython library can be used to run GATK, SAMTOOLS, bwa, PICARD. ? I hope my question is clear. ...
written 2.2 years ago by
shuksi1984 • 60
3
votes
0
answers
1.2k
views
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... How can I extract query sequence, it's corresponding rsid, subject sequence, it's corresponding rsID, score, and blast metadata in excel sheet from BLASTn output?
...
written 2.2 years ago by
shuksi1984 • 60
0
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1.0k
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Comment:
C: standalone blast output to excel
... Following should be the content of excel:
Score Expect Identities Gaps Strand
6.684e+06 bits(3619559) 0.0 3619559/3619559(100%) 0/3619559(0%) Plus/Plus
Query 1
TACCATTTGAGTATTTCTGAATTTAGGTATTTATTTTCGCGTTCGTATAGAAATACTCCA 60
|||||||||||||||||||||||||||||||||||| ...
written 2.2 years ago by
shuksi1984 • 60
• updated
2.2 years ago by
finswimmer ♦ 14k
Latest awards to shuksi1984
Centurion
2.0 years ago,
created 100 posts.
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2.6 years ago,
created 50 posts within first three months of joining.
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