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User: shuksi1984

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shuksi1984 • 50
Reputation:
50
Status:
New User
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Last seen:
1 month, 2 weeks ago
Joined:
1 year ago
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Posts by shuksi1984

<prev • 102 results • page 1 of 11 • next >
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Metagenomics raw data to develop pipeline
... I want to build metagenomics pipeline. To start with, need raw data. How to identify and get raw data for bacterial taxaonomy, phylogenetic analysis, and resistance gene identification? I believe for taxonomic classification and phylogenetic analysis, the raw data will have reads from multiple bact ...
genome next-gen sequencing written 10 weeks ago by shuksi1984 • 50 • updated 10 weeks ago by 5heikki ♦ 8.4k
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Comment: C: What do you want to learn about bioinformatics?
... Why should a person choose bioinformatics as a carrer? What is so exciting about the course? Why are we exploring genomics? How can a Bioinformatics scientist help us in day to day life? (Maybe we can elaborate bioinfo in healthcare) ...
written 3 months ago by shuksi1984 • 50
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Comment: C: chatbot for genomics
... How about using IBM assistant??? ...
written 3 months ago by shuksi1984 • 50
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Comment: C: chatbot for genomics
... Educate people about genomics. ...
written 3 months ago by shuksi1984 • 50
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chatbot for genomics
... How to get started to create a chatbot for genomics? Kindly, share the links or websites or idea to get started on it. I am NGS data analyst with the knowledge of bioinformatics, linux, and Python. Also, let me know the importance of machine learning in genomics. ...
genome written 3 months ago by shuksi1984 • 50
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Comment: C: How To Get The Sequence Of A Genomic Region From Ucsc?
... I think, now UCSC browser has changed. Even I have the same query, but unable to fetch FASTA sequence using the coordinates. Can u explain using the given link.. https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=703655381_NWHqxkgVDaPPscUhaKxyA9bAbb7e ...
written 4 months ago by shuksi1984 • 50
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Comment: C: Biopython for NGS
... While browsing, I also came across Ruffus. How about Ruffus? Which one would be better sankemake or Ruffus? Although, both are python library but there must be some difference ...
written 4 months ago by shuksi1984 • 50
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Biopython for NGS
... Can I use Biopython to automate the NGS pipeline. If yes, which Biopython library can be used to run GATK, SAMTOOLS, bwa, PICARD. ? I hope my question is clear. ...
next-gen snp sequencing written 4 months ago by shuksi1984 • 50
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Extract specific information from BLASTn output
... How can I extract query sequence, it's corresponding rsid, subject sequence, it's corresponding rsID, score, and blast metadata in excel sheet from BLASTn output? ...
genome alignment sequence written 5 months ago by shuksi1984 • 50
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Comment: C: standalone blast output to excel
... Following should be the content of excel: Score Expect Identities Gaps Strand 6.684e+06 bits(3619559) 0.0 3619559/3619559(100%) 0/3619559(0%) Plus/Plus Query 1 TACCATTTGAGTATTTCTGAATTTAGGTATTTATTTTCGCGTTCGTATAGAAATACTCCA 60 |||||||||||||||||||||||||||||||||||| ...
written 5 months ago by shuksi1984 • 50 • updated 5 months ago by finswimmer ♦ 11k

Latest awards to shuksi1984

Centurion 3 months ago, created 100 posts.
Rising Star 10 months ago, created 50 posts within first three months of joining.
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