User: shuksi1984
shuksi1984 • 40
- Reputation:
- 40
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- New User
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- Last seen:
- 2 weeks, 3 days ago
- Joined:
- 9 months, 2 weeks ago
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Posts by shuksi1984
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... Why should a person choose bioinformatics as a carrer?
What is so exciting about the course?
Why are we exploring genomics?
How can a Bioinformatics scientist help us in day to day life? (Maybe we can elaborate bioinfo in healthcare)
...
written 19 days ago by
shuksi1984 • 40
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Comment:
C: chatbot for genomics
... How about using IBM assistant??? ...
written 26 days ago by
shuksi1984 • 40
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206
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Comment:
C: chatbot for genomics
... Educate people about genomics. ...
written 28 days ago by
shuksi1984 • 40
1
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... How to get started to create a chatbot for genomics? Kindly, share the links or websites or idea to get started on it. I am NGS data analyst with the knowledge of bioinformatics, linux, and Python. Also, let me know the importance of machine learning in genomics. ...
written 28 days ago by
shuksi1984 • 40
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7
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7
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... I think, now UCSC browser has changed. Even I have the same query, but unable to fetch FASTA sequence using the coordinates. Can u explain using the given link..
https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=703655381_NWHqxkgVDaPPscUhaKxyA9bAbb7e ...
written 4 weeks ago by
shuksi1984 • 40
0
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202
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Comment:
C: Biopython for NGS
... While browsing, I also came across Ruffus. How about Ruffus? Which one would be better sankemake or Ruffus? Although, both are python library but there must be some difference ...
written 8 weeks ago by
shuksi1984 • 40
4
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202
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... Can I use Biopython to automate the NGS pipeline. If yes, which Biopython library can be used to run GATK, SAMTOOLS, bwa, PICARD. ? I hope my question is clear. ...
written 8 weeks ago by
shuksi1984 • 40
3
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... How can I extract query sequence, it's corresponding rsid, subject sequence, it's corresponding rsID, score, and blast metadata in excel sheet from BLASTn output?
...
written 9 weeks ago by
shuksi1984 • 40
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193
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Comment:
C: standalone blast output to excel
... Following should be the content of excel:
Score Expect Identities Gaps Strand
6.684e+06 bits(3619559) 0.0 3619559/3619559(100%) 0/3619559(0%) Plus/Plus
Query 1
TACCATTTGAGTATTTCTGAATTTAGGTATTTATTTTCGCGTTCGTATAGAAATACTCCA 60
|||||||||||||||||||||||||||||||||||| ...
written 3 months ago by
shuksi1984 • 40
• updated
3 months ago by
finswimmer ♦ 9.0k
1
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193
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5 follow
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... I want the standalone blast output in a specific format, which needs to have only aligned sequence the corresponding sequence id . Hence, is it possible to dump standalone blast output to excel? ...
written 3 months ago by
shuksi1984 • 40
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created 100 posts.
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created 50 posts within first three months of joining.
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