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User: shuksi1984

gravatar for shuksi1984
shuksi1984 • 60
Reputation:
60
Status:
New User
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Last seen:
1 year, 5 months ago
Joined:
2 years, 3 months ago
Email:
s*********@gmail.com

Posts by shuksi1984

<prev • 102 results • page 1 of 11 • next >
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Metagenomics raw data to develop pipeline
... I want to build metagenomics pipeline. To start with, need raw data. How to identify and get raw data for bacterial taxaonomy, phylogenetic analysis, and resistance gene identification? I believe for taxonomic classification and phylogenetic analysis, the raw data will have reads from multiple bact ...
genome next-gen sequencing written 18 months ago by shuksi1984 • 60 • updated 18 months ago by 5heikki ♦ 8.9k
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Comment: C: What do you want to learn about bioinformatics?
... Why should a person choose bioinformatics as a carrer? What is so exciting about the course? Why are we exploring genomics? How can a Bioinformatics scientist help us in day to day life? (Maybe we can elaborate bioinfo in healthcare) ...
written 19 months ago by shuksi1984 • 60
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Comment: C: chatbot for genomics
... How about using IBM assistant??? ...
written 19 months ago by shuksi1984 • 60
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Comment: C: chatbot for genomics
... Educate people about genomics. ...
written 19 months ago by shuksi1984 • 60
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chatbot for genomics
... How to get started to create a chatbot for genomics? Kindly, share the links or websites or idea to get started on it. I am NGS data analyst with the knowledge of bioinformatics, linux, and Python. Also, let me know the importance of machine learning in genomics. ...
genome written 19 months ago by shuksi1984 • 60
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Comment: C: How To Get The Sequence Of A Genomic Region From Ucsc?
... I think, now UCSC browser has changed. Even I have the same query, but unable to fetch FASTA sequence using the coordinates. Can u explain using the given link.. https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=703655381_NWHqxkgVDaPPscUhaKxyA9bAbb7e ...
written 19 months ago by shuksi1984 • 60
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Comment: C: Biopython for NGS
... While browsing, I also came across Ruffus. How about Ruffus? Which one would be better sankemake or Ruffus? Although, both are python library but there must be some difference ...
written 20 months ago by shuksi1984 • 60
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Biopython for NGS
... Can I use Biopython to automate the NGS pipeline. If yes, which Biopython library can be used to run GATK, SAMTOOLS, bwa, PICARD. ? I hope my question is clear. ...
next-gen snp sequencing written 20 months ago by shuksi1984 • 60
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Extract specific information from BLASTn output
... How can I extract query sequence, it's corresponding rsid, subject sequence, it's corresponding rsID, score, and blast metadata in excel sheet from BLASTn output? ...
genome alignment sequence written 20 months ago by shuksi1984 • 60
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Comment: C: standalone blast output to excel
... Following should be the content of excel: Score Expect Identities Gaps Strand 6.684e+06 bits(3619559) 0.0 3619559/3619559(100%) 0/3619559(0%) Plus/Plus Query 1 TACCATTTGAGTATTTCTGAATTTAGGTATTTATTTTCGCGTTCGTATAGAAATACTCCA 60 |||||||||||||||||||||||||||||||||||| ...
written 21 months ago by shuksi1984 • 60 • updated 21 months ago by finswimmer ♦ 13k

Latest awards to shuksi1984

Centurion 19 months ago, created 100 posts.
Rising Star 2.2 years ago, created 50 posts within first three months of joining.
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