User: Arko

gravatar for Arko
Arko10
Reputation:
10
Status:
New User
Location:
US/Boston/Boston University
Last seen:
1 week, 2 days ago
Joined:
2 months, 1 week ago
Email:
a*****@bu.edu

Posts by Arko

<prev • 4 results • page 1 of 1 • next >
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Liftover dbSNP IDs
... I have a list of SNPs from dbSNP build 150, I want to run a batch analysis on SIFT which uses an older build of rsid's (build 138 - if I'm not mistaken). I understand that dbSNP rsids are updated based to avoid synonymous occurrences, but could someone please clarify on how would I map the rsids t ...
assembly snp written 9 days ago by Arko10 • updated 9 days ago by Pierre Lindenbaum108k
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Comment: C: Differential Expression of a normalized RNAseq expression dataset
... A rather silly question, but from the file manifest how many of the files are required to be downloaded, as from what I see each .result file contains counts and corresponding genes apart from the annotation.txt files. There is normalized and RAW data, so if I were to download only the RAW data how ...
written 9 weeks ago by Arko10
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Comment: C: Differential Expression of a normalized RNAseq expression dataset
... Thanks Kevin, I shall follow up on it and let you know how it works out! ...
written 9 weeks ago by Arko10
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Differential Expression of a normalized RNAseq expression dataset
... I have a RNAseq expression matrix obtained from TCGA (TCGA-GBM) it's been normalized. The columns are for sample IDs and the rows are for genes. I want to do a differential expression analysis. I also have the copy number matrix for the same dataset from cbioportal but I'm not exactly sure on how to ...
glioblastoma R tcga deseq rna-seq written 9 weeks ago by Arko10 • updated 9 weeks ago by Kevin Blighe21k

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