User: Arko

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Arko10
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10
Status:
New User
Location:
US/Boston/Boston University
Last seen:
6 days, 16 hours ago
Joined:
2 weeks ago
Email:
a*****@bu.edu

Posts by Arko

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Comment: C: Differential Expression of a normalized RNAseq expression dataset
... A rather silly question, but from the file manifest how many of the files are required to be downloaded, as from what I see each .result file contains counts and corresponding genes apart from the annotation.txt files. There is normalized and RAW data, so if I were to download only the RAW data how ...
written 7 days ago by Arko10
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Comment: C: Differential Expression of a normalized RNAseq expression dataset
... Thanks Kevin, I shall follow up on it and let you know how it works out! ...
written 7 days ago by Arko10
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Differential Expression of a normalized RNAseq expression dataset
... I have a RNAseq expression matrix obtained from TCGA (TCGA-GBM) it's been normalized. The columns are for sample IDs and the rows are for genes. I want to do a differential expression analysis. I also have the copy number matrix for the same dataset from cbioportal but I'm not exactly sure on how to ...
glioblastoma R tcga deseq rna-seq written 8 days ago by Arko10 • updated 7 days ago by Kevin Blighe17k

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